PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA46G00065 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | SRS | ||||||||
Protein Properties | Length: 103aa MW: 11612.8 Da PI: 6.5678 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 80.9 | 3.4e-25 | 6 | 59 | 103 | 154 |
DUF702 103 sslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154 ++P+e+ss+a frcvrvssvd+ g++++aYqt+++igGhvfkGiL+d+G+e+ AA46G00065 6 GQFPAELSSPADFRCVRVSSVDNnnGDDQYAYQTTINIGGHVFKGILHDHGPEN 59 57********************877899************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.4E-22 | 6 | 58 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 5.4E-28 | 7 | 57 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 103 aa Download sequence Send to blast |
MHTTPGQFPA ELSSPADFRC VRVSSVDNNN GDDQYAYQTT INIGGHVFKG ILHDHGPEND 60 VMIIDHNHHH HHHQESLSSS LMIINRPLTD LMFGTHFSPH QKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA46G00065 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001324102.1 | 6e-32 | SHI-related sequence3 | ||||
Refseq | NP_179735.1 | 6e-32 | SHI-related sequence3 | ||||
Swissprot | Q9SJT8 | 5e-33 | SRS3_ARATH; Protein SHI RELATED SEQUENCE 3 | ||||
TrEMBL | A0A1J3FFN0 | 8e-33 | A0A1J3FFN0_NOCCA; Protein SHI RELATED SEQUENCE 3 | ||||
TrEMBL | A0A1J3I8M5 | 8e-33 | A0A1J3I8M5_NOCCA; Protein SHI RELATED SEQUENCE 3 (Fragment) | ||||
STRING | AT2G21400.1 | 2e-31 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9188 | 26 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21400.1 | 7e-33 | SHI-related sequence3 |