PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA46G00064
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family SRS
Protein Properties Length: 94aa    MW: 10960.5 Da    PI: 10.2856
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA46G00064genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702101.91.2e-31490489
      DUF702  4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel.kskkqsalsst 89
                 + +C+dCGnqakk+C + RCRtCCk++gf+C+th+kstWvpa++rr  ++++++++++ +++++++    +++l ++++ s+ ss+
  AA46G00064  4 MGRKCEDCGNQAKKECLYIRCRTCCKTKGFQCQTHIKSTWVPAYNRRRSHKHQTQSQTQLQTQTQTQPLTTPKRLrEQQTFSSPSSS 90
                5679***************************************87776555544444444444444444444443133333443333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.9E-29589IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016235.3E-27749IPR006510Zinc finger, lateral root primordium type 1
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MMMMGRKCED CGNQAKKECL YIRCRTCCKT KGFQCQTHIK STWVPAYNRR RSHKHQTQSQ  60
TQLQTQTQTQ PLTTPKRLRE QQTFSSPSSS VTSE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA46G00064
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013635517.18e-34PREDICTED: protein SHI RELATED SEQUENCE 3-like
SwissprotQ9SJT84e-31SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLA0A0D3C0Z82e-32A0A0D3C0Z8_BRAOL; Uncharacterized protein
STRINGBo4g145920.13e-33(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2262134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.12e-28SHI-related sequence3