PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00651
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 454aa    MW: 49722.9 Da    PI: 9.2377
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00651genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.98.9e-12191247155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  AA44G00651 191 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 247
                 57*******************5444.2455536655.779999**************98 PP
2AP246.78.1e-15292341355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  AA44G00651 292 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 341
                 9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.2E-15191257IPR016177DNA-binding domain
CDDcd000187.11E-19191257No hitNo description
PfamPF008473.1E-9191247IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-12192256IPR001471AP2/ERF domain
SMARTSM003802.2E-23192261IPR001471AP2/ERF domain
PROSITE profilePS5103217.477192255IPR001471AP2/ERF domain
PRINTSPR003672.1E-6193204IPR001471AP2/ERF domain
CDDcd000183.60E-24290351No hitNo description
SuperFamilySSF541717.19E-18290351IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-18291349IPR001471AP2/ERF domain
SMARTSM003803.7E-33291355IPR001471AP2/ERF domain
PROSITE profilePS5103219.203291349IPR001471AP2/ERF domain
PfamPF008471.1E-9292341IPR001471AP2/ERF domain
PRINTSPR003672.1E-6331351IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MKKNNTKSSS SSSLSPSSSS SPHNNNNWLS FSLSNNFNSS PNPNLSLFQA FSSPQVQRQH  60
DGDATAALSI YPGGPKLEDF LGGGSSRITT TTSTTTTSQV QLHSSLCGGV VYSSELSSPS  120
NPPSAAEIYD AELKSIAASF LGNYSGEIHN GNHQELQEQQ QKQKQKLNPL AVSEVSPTTK  180
KNVESFGQRT SIYRGVTRHR WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EEKAARAYDL  240
AALKYWGPTT TTNFPISNYE SELEEMKHMT RQEFVASLRR KSSGFSRGAS MYRGVTRHHQ  300
HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDI SRYDVKSIAS  360
CNLPVGGLMP KPPSSAAADK AIELSPPELP SSSSLTFDVA TPVHDHGGTF YPTGIPIKSD  420
PADHYWSNVF GFQGNPKTEI RPLVVPYGSE LHSP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00651
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5856850.0AY585685.1 Arabidopsis thaliana clone at5g57390 AP2/EREBP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200549.20.0AINTEGUMENTA-like 5
SwissprotQ6PQQ30.0AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLV4LS250.0V4LS25_EUTSA; Uncharacterized protein
STRINGAT5G57390.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.10.0AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]