PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA44G00501
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 700aa    MW: 77246.9 Da    PI: 7.1521
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA44G00501genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.1e-06297317526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 +C++f + G Ck Gd C +aHg
  AA44G00501 297 PCPDFKK-GACKQGDMCEYAHG 317
                 8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484034.35E-1533158IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.2E-1537177IPR020683Ankyrin repeat-containing domain
PfamPF127961.5E-978147IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.58478171IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2278108IPR002110Ankyrin repeat
CDDcd002048.63E-1380156No hitNo description
SMARTSM002485.2E-5113145IPR002110Ankyrin repeat
PROSITE profilePS5008811.114113148IPR002110Ankyrin repeat
SMARTSM003568.5E-5292318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.709297319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4325355IPR000571Zinc finger, CCCH-type
SMARTSM0035659327350IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MCGLSKKLDS EKTLSSLSDQ EDKPMDDAEW EHSFSALLEF AADNNVEGFK RQLSVVPCIN  60
QVGLWYRRQR FVRRMVLEQR TPLMVASIYG SLDVLKLIIS FPEVEVNLSC GSDKSTALHC  120
AASGACVNSL DVVKLLLTAG ADPNLADAHG NRPVDVLVLS PQAPGLRAIL EEILKKDYPI  180
SEDLHASSSS LGSSFRSLSS SPDNGSSLLS LDSVSSPTKP NGSDASFATE KKEYPIDPSL  240
LDIKSGIYST DEFRMFSFKI RPCSRAYSHD WTECPFAHPG ENARRRDPRK FHYTCVPCPD  300
FKKGACKQGD MCEYAHGVFE CWLHPAQYRT RLCKDGTSCN RRVCFFAHAN EELRPLYPST  360
GSGLPSPRAS FVSASTMDMA SVLNMLPGSP SAAQHSFTPP ISPSGNGMPH SSMGWSQQNI  420
PALHLPGSNL QLSRLRSSLN AKDLPAEQLS MLQEFEMQRQ KQQQLIGDMS SPRFMNHSAR  480
PKTLTPSNLE ELFSTEVSSP RFPDQLAATS VLSPSHKSAL LNQLQNKQSM LSPIRTNLMS  540
QKNGEHPQLQ TSSPRGGEPI SPMNSRLANL TFRDKQQLQH TRSLSSRDFG SSLPRDLMPV  600
DAGSPLSPWS SWDQGNKVDW SVQSDELGRL RKSHSLANPT GEADVSWVQQ LANDSAIRNN  660
NRIMNGGRPM MQGGTSLNTH GEGRESDVLD SWLEQLHLDR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA44G00501
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006399772.10.0zinc finger CCCH domain-containing protein 56
SwissprotQ9LXV40.0C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLE4MVH50.0E4MVH5_EUTHA; mRNA, clone: RTFL01-01-B13
TrEMBLV4KTE70.0V4KTE7_EUTSA; Uncharacterized protein
STRINGXP_006399772.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17852879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.10.0CCCH-type zinc finger protein with ARM repeat domain