PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA43G00092
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GRAS
Protein Properties Length: 503aa    MW: 55697.2 Da    PI: 5.2148
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA43G00092genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.43.1e-1041164961373
        GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkf 93 
                 lv+lL+++Aea +  +++  l++ +L++l++l+sp++ ++m+Rlaa+ft++L++ l r  + ++++ + s+ ++++   +++ ++a++l++++sP+++f
  AA43G00092 116 LVHLLVAAAEASTGANKTreLTRVILTKLKDLVSPSDrTNMERLAAHFTNGLSKLLER-ATVISNQQQRSSHQHRDihdQADITSAFQLLQDMSPFVNF 213
                 689********9987765559***********9999989*******************.4444443333333333367799999*************** PP

        GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                 ++lta qaIleave ++rvHi+D+di++G+QW++L+qaL sR+++p   +l+iT++++ ++g  s  +++e g+rL+ fAe++g pf+++    ++   
  AA43G00092 214 GYLTATQAILEAVEYKRRVHIVDYDITEGIQWASLMQALVSRNADPSaqHLKITALSRTTNGkkSVAAVQEAGRRLTAFAESIGQPFSYHHCKLDTDGV 312
                 *******************************************654445*********999899999************************98889999 PP

        GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleaklpreseerikvE 286
                 l++++L++ +gEa+++n++l+l r+ +++ ++     ++L   k l+Pk++++v++e+ + +++ F+ rf++ l+ +sa+fdslea++p ++++r +vE
  AA43G00092 313 LTPSSLKLVKGEAVVINCMLHLPRFSHQTPKSLI---SFLTEAKALNPKLITLVHEEVGLmGDQGFMGRFMDLLHQFSAMFDSLEAGFPITNQARGFVE 408
                 *************************987777776...9*********************99************************************** PP

        GRAS 287 rellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                 r+++g++i+++++  +++    + e+++ W  +le+ GFkpv++s  + +qaklll+ ++ dgy+vee  ++ lvlgWk+r+Lvs+S+W
  AA43G00092 409 RVFIGPWISSWLTRIKTDaEDVEAESFALWPGWLESNGFKPVEMSFANRCQAKLLLSLFS-DGYNVEELgKNGLVLGWKSRRLVSASFW 496
                 *************9988845668899**********************************.******98688999************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.21690477IPR005202Transcription factor GRAS
PfamPF035141.1E-101116496IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MAMNYPYDDF LDLFFSGSSD MPATAASTTA AATTSSCEEQ GYSWNDCSVQ MDWDSDFRDL  60
LESMMCEEGI MMEPHPLPPY QCGQVAMSNS ASTELSVTEA VGVEEPKADE SKGLRLVHLL  120
VAAAEASTGA NKTRELTRVI LTKLKDLVSP SDRTNMERLA AHFTNGLSKL LERATVISNQ  180
QQRSSHQHRD IHDQADITSA FQLLQDMSPF VNFGYLTATQ AILEAVEYKR RVHIVDYDIT  240
EGIQWASLMQ ALVSRNADPS AQHLKITALS RTTNGKKSVA AVQEAGRRLT AFAESIGQPF  300
SYHHCKLDTD GVLTPSSLKL VKGEAVVINC MLHLPRFSHQ TPKSLISFLT EAKALNPKLI  360
TLVHEEVGLM GDQGFMGRFM DLLHQFSAMF DSLEAGFPIT NQARGFVERV FIGPWISSWL  420
TRIKTDAEDV EAESFALWPG WLESNGFKPV EMSFANRCQA KLLLSLFSDG YNVEELGKNG  480
LVLGWKSRRL VSASFWSGGE PNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-411034977379Protein SCARECROW
5b3h_A3e-411034976378Protein SCARECROW
5b3h_D3e-411034976378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA43G00092
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872385.20.0scarecrow-like protein 26
SwissprotQ9SUF50.0SCL26_ARATH; Scarecrow-like protein 26
TrEMBLA0A178UYV90.0A0A178UYV9_ARATH; Uncharacterized protein
STRINGBostr.3877s0035.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99142736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.10.0GRAS family protein