PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA40G00228

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

FAR1

Protein Properties

Length: 791aa MW: 91248.9 Da PI: 6.8481

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA40G00228	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.3	1.9e-21	74	148	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fYn+YA ++GF+vr+ + ++s+++g +t+r+fvCskeg++ + +rtgC+a ++v+++++gkw+++++++eHnHel AA40G00228 74 DFYNSYAARIGFKVRTGQLYRSRTDGAVTSRRFVCSKEGFQLN--------------SRTGCTAFIRVQRRDTGKWVLDQIQKEHNHEL 148 6*************************************876..............589*************************98 PP
2	FAR1	66.7	6e-21	234	310	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y++YA+ vGF+vr+ + +sk +g+it+r+fvCs+eg+++++ r+gC a +++k++++g w v++l+++HnHel p AA40G00228 234 QYYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELEP 310 69************************************9994..............799*************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.0E-17	74	148	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.9E-16	234	310	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-27	402	494	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.212	677	713	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.8E-8	685	710	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-8	688	715	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence Send to blast
MPKVELETPS FPLASTEMES ADTEPNSFNN MVAKAYPLGV LRVMNNNGIT EDEGDSGVEP 60 YVGLEFHTAE EARDFYNSYA ARIGFKVRTG QLYRSRTDGA VTSRRFVCSK EGFQLNSRTG 120 CTAFIRVQRR DTGKWVLDQI QKEHNHELGG HVEETPPRPV VQPRTPAPTK LGVTVPHRPK 180 MKVVDESDKE RSCPSNGVSF KRFKSEECVD QTQQPKSTDP YAGLEFSSAN DACQYYQAYA 240 EVVGFRVRIG QLFRSKVDGS ITSRRFVCSR EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL 300 NKDHNHELEP GKKNAGMKKI TEDVTGGLDS DDLIELNDFS DKTRENGIGK EWYPLFLEHF 360 QSRQTEDMGF FYAVELDSNG SCLSIFWADS RTRFACSQFG DVVVFDTSYR KGSYSVPFAT 420 FIGFNHHRQP VLLGCALIAD ESKEAFSWLF QTWLRAMSGR RPRSIVADQD LAIQQALAQV 480 FPGTHHRFSA WQMREKEQEN LRSFPSEFKY EYEKCIYQTQ TTVDFDTLWN SLVNKYGLRD 540 DIWLREIYEQ RENWVPAYLR ASFFGGIPIN GIIEPFFGTS LDALTPLKDF ISRYEQALEQ 600 RREEERKEDF NSYNLQPFLQ TKEPVEEQCR RLYTLTIFRI FQNELVQSYN YLCLKTYEEG 660 AMSRFLVRKC GNENEKHVVT FGAANLNASC SCQMFEHEGL LCRHILKVFN LLDIRELPSR 720 YILHRWTKNA EFGFVRDMES GVSSQDLKAL MVWSLREAAS KYIEFGTSSL EKYKLAYEIM 780 REGGKKLCWQ R

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence Send to blast

MPKVELETPS FPLASTEMES ADTEPNSFNN MVAKAYPLGV LRVMNNNGIT EDEGDSGVEP  60
YVGLEFHTAE EARDFYNSYA ARIGFKVRTG QLYRSRTDGA VTSRRFVCSK EGFQLNSRTG  120
CTAFIRVQRR DTGKWVLDQI QKEHNHELGG HVEETPPRPV VQPRTPAPTK LGVTVPHRPK  180
MKVVDESDKE RSCPSNGVSF KRFKSEECVD QTQQPKSTDP YAGLEFSSAN DACQYYQAYA  240
EVVGFRVRIG QLFRSKVDGS ITSRRFVCSR EGFQHPSRMG CGAYMRIKRQ DSGGWIVDRL  300
NKDHNHELEP GKKNAGMKKI TEDVTGGLDS DDLIELNDFS DKTRENGIGK EWYPLFLEHF  360
QSRQTEDMGF FYAVELDSNG SCLSIFWADS RTRFACSQFG DVVVFDTSYR KGSYSVPFAT  420
FIGFNHHRQP VLLGCALIAD ESKEAFSWLF QTWLRAMSGR RPRSIVADQD LAIQQALAQV  480
FPGTHHRFSA WQMREKEQEN LRSFPSEFKY EYEKCIYQTQ TTVDFDTLWN SLVNKYGLRD  540
DIWLREIYEQ RENWVPAYLR ASFFGGIPIN GIIEPFFGTS LDALTPLKDF ISRYEQALEQ  600
RREEERKEDF NSYNLQPFLQ TKEPVEEQCR RLYTLTIFRI FQNELVQSYN YLCLKTYEEG  660
AMSRFLVRKC GNENEKHVVT FGAANLNASC SCQMFEHEGL LCRHILKVFN LLDIRELPSR  720
YILHRWTKNA EFGFVRDMES GVSSQDLKAL MVWSLREAAS KYIEFGTSSL EKYKLAYEIM  780
REGGKKLCWQ R

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA40G00228

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024014852.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_024014853.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_024014854.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_024014855.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	R0HJN8	0.0	R0HJN8_9BRAS; Uncharacterized protein
STRING	Bostr.2570s0035.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5730	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]