PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA40G00035

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

WRKY

Protein Properties

Length: 332aa MW: 36984.3 Da PI: 10.2104

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA40G00035	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.4e-30	264	321	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++ +++++tYegeHnh+ AA40G00035 264 DEYSWRKYGQKPIKGSPHPRGYYKCSSIrGCPARKHVERCVDESSMLIVTYEGEHNHS 321 9**********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.9E-15	216	260	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	2.0E-33	249	321	IPR003657	WRKY domain
PROSITE profile	PS50811	29.379	257	323	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-26	260	321	IPR003657	WRKY domain
SMART	SM00774	1.7E-36	262	322	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	264	320	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEEIESANKA AMESCHGVLN LISQQTSNNP KAILMETKES LSKLKRVSSL LTKGLGHGKI 60 RKHNKFTSSL PQHIFLESPI CNIPAFSGYN IPILAPKPLQ IIPSVTSYGE IEKLGHPPLM 120 LNQRICVEKS FLELKPPSFR VIDHKQANPL PYNHQVKHSR SNNGVNLKFD GSKSNSCYYS 180 PSVSNGSRSF VSSISSVGDY DRNSFHLIGS EHSRRTTCSG GGEDGSLRCG SRSKCHCSKK 240 RKLRVKRRIK VAAISNKIAD IPPDEYSWRK YGQKPIKGSP HPRGYYKCSS IRGCPARKHV 300 ERCVDESSML IVTYEGEHNH SRILMSSQSA HT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	3e-20	250	321	2	72	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA40G00035

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020888964.1	1e-162	probable WRKY transcription factor 39
Swissprot	Q9SR07	1e-160	WRK39_ARATH; Probable WRKY transcription factor 39
TrEMBL	D7L2W9	1e-161	D7L2W9_ARALL; WRKY DNA-binding protein 39
STRING	fgenesh2_kg.3__432__AT3G04670.1	1e-162	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3885	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	1e-120	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]