PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00438
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 272aa    MW: 31173.2 Da    PI: 8.8751
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00438genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.37.5e-15116167155
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   +s++ + a+i   +++Y+k+L+
  AA39G00438 116 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YSQRGDQASIIGGTINYVKELE 167
                 79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.34E-13114171No hitNo description
Gene3DG3DSA:4.10.280.102.9E-14115169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-17115181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.967115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-12116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MALEAVVYSQ DPLGNISCKD FMLYDPYNQQ NLDQDTKNNV KFGQETSFVD QEEHKWRNYP  60
HQYPLLNRSL EEGFGQGSST GPVIDDRENH PPPVQRKKRR RATRRSSKNK EEIETQRMTH  120
IAVERNRRKQ MNEYLAVLRS LMPSSYSQRG DQASIIGGTI NYVKELEHIL QSLEFKTKTY  180
PTTTLTTCPF SDIFTKYSSV DESSSTAEID VTVVESYANI KIATKKRSKQ LLKLVASLES  240
LKLTLLHLNV TTLHYSVLYS INVKADLENT GV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100QRKKRRR
2116127RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00438
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564171.12e-98basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ9SK912e-99BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A178WMN44e-97A0A178WMN4_ARATH; Uncharacterized protein
TrEMBLD7KLS21e-96D7KLS2_ARALL; Uncharacterized protein
STRINGAT1G22490.17e-98(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-80bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]