PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00340
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Trihelix
Protein Properties Length: 436aa    MW: 50110.7 Da    PI: 6.5945
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00340genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.31.5e-26121214184
    trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdq 84 
                 +Wt+++v++Li+a++++++++++++         +kk++W++vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++t ++++++ +++d 
  AA39G00340 121 KWTDKMVKLLITAVSYIGDDSSQDSgsrrkfavlQKKGKWKSVSKVMAERGYRVSPQQCEDKFNDLNKRYKKLNDMIGRGTcCQVVENPALLDG 214
                 7****************99999876678889999**********************************************85777777777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-23119242No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEGNFSQGGV VRGGASSYGG FDLQNSVRVH HPDAAMHQHR NHPNSRKDSA ARSSIHESLP  60
FTMVTSQACD QNMPMIDHNK IEREKNSISE DDEPSFTEEG VDGHNEANNK SSKGSPWQRV  120
KWTDKMVKLL ITAVSYIGDD SSQDSGSRRK FAVLQKKGKW KSVSKVMAER GYRVSPQQCE  180
DKFNDLNKRY KKLNDMIGRG TCCQVVENPA LLDGIDYLND KEKDDVRKIM SSKHLFYEEM  240
CSYHNGNRLH LPHDLALQRS LQSALKNRDD HDNDECRKHQ IEDIDDEDHD GEGDEYEEHH  300
GDCRGVHYGS GPLKKVRQIH EDGGNPSHMN PLECNRGSLP QIPFFSQANG VGESERGASM  360
QKQYWIESRS LQLEEQKLQI QVELLELEKQ RFRWQRFSKK RDQELERMRM ENEKMKLENE  420
KMGLELKQKG NLGAEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00340
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006307528.10.0uncharacterized protein LOC17897295
TrEMBLR0GX820.0R0GX82_9BRAS; Uncharacterized protein
STRINGCagra.1632s0015.1.p0.0(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50422752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.10.0sequence-specific DNA binding transcription factors