PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA39G00305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | WOX | ||||||||
Protein Properties | Length: 193aa MW: 21969.6 Da PI: 5.8812 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 8.1e-20 | 80 | 140 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ + + + +p++++++e++++l +te++V++WFqNrRa+ k+ AA39G00305 80 RHRWTPTTTQLQILESIYSEgSGTPNRRRIREITSELsehgTITETNVYNWFQNRRARSKR 140 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 101.5 | 6.1e-33 | 79 | 142 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++G tPn+++i++it+eL+e+G i+++NV++WFQNr+aR+++kq AA39G00305 79 TRHRWTPTTTQLQILESIYSEGSGTPNRRRIREITSELSEHGTITETNVYNWFQNRRARSKRKQ 142 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.46E-17 | 75 | 142 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.1E-15 | 75 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.107 | 76 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-12 | 78 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.85E-13 | 80 | 142 | No hit | No description |
Pfam | PF00046 | 2.4E-17 | 80 | 140 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MEMNRESQNA AFHDGRVMTE EQMEILRKQI AVYAVICDQL VVLHNSLSSL HPLSSELRLS 60 NGGYLDPILG SSSVHRISTR HRWTPTTTQL QILESIYSEG SGTPNRRRIR EITSELSEHG 120 TITETNVYNW FQNRRARSKR KQTSVVTDQI DAAATANMEE EMRSCGDSGG LEDYEHILFP 180 PPDLGILFYL FNI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA39G00305 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_173493.2 | 1e-98 | WUSCHEL related homeobox 14 | ||||
Swissprot | Q9LM84 | 1e-99 | WOX14_ARATH; WUSCHEL-related homeobox 14 | ||||
TrEMBL | A0A178W4J5 | 2e-97 | A0A178W4J5_ARATH; WOX14 | ||||
STRING | AT1G20700.1 | 6e-98 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12211 | 17 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 1e-87 | WUSCHEL related homeobox 14 |
Publications ? help Back to Top | |||
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