PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA39G00183

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

WRKY

Protein Properties

Length: 294aa MW: 31883 Da PI: 8.9867

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA39G00183	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.8	2.7e-29	1	60	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+ ed ++++ tYeg+Hnh+ AA39G00183 1 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCCEDMTILISTYEGTHNHP 60 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00774	3.4E-33	1	61	IPR003657	WRKY domain
PROSITE profile	PS50811	28.105	1	62	IPR003657	WRKY domain
SuperFamily	SSF118290	3.27E-25	1	62	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.5E-28	2	62	IPR003657	WRKY domain
Pfam	PF03106	1.8E-25	2	60	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MNDGCQWRKY GQKIAKGNPC PRAYYRCTIA PSCPVRKQVQ RCCEDMTILI STYEGTHNHP 60 LPISATAMAS ATSAAAAMLL TGPTSSSSSS SSTADLHGLN FSLSSNTSTN PKSPFNLPIS 120 SSSSPHYHPT IILDLTTSSS SSSSSSSQQF ASILNRFTSP NHSRSNNYTS TNLNFSNNTN 180 TLMNFGGSTN QLVPYNHQMF QNRTSYNQFG PGRSSYSLQN STTQSNLDHI GNGIKNVNNN 240 HQHQVVQSLP AETIKAITTD PSFQSALATA LSSIISGDQN KKIDERRNED EKNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	1e-19	1	62	14	74	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA39G00183

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430068	7e-81	KF430068.1 Brassica rapa WRKY transcription factor 61 (WRKY61) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013647136.1	1e-105	probable WRKY transcription factor 61
Refseq	XP_013660242.1	1e-105	probable WRKY transcription factor 61
Swissprot	Q8VWV6	1e-100	WRK61_ARATH; Probable WRKY transcription factor 61
TrEMBL	A0A078GAF5	1e-104	A0A078GAF5_BRANA; BnaA09g44440D protein
TrEMBL	A0A3P5YSN3	1e-104	A0A3P5YSN3_BRACM; Uncharacterized protein
STRING	Bo8g103030.1	1e-101	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12663	17	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18860.1	1e-59	WRKY DNA-binding protein 61

Publications ? help Back to Top
Gao R,Liu P,Yong Y,Wong SM Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana. Sci Rep, 2016. 6: p. 24604 [PMID:27086702]