PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00095
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 377aa    MW: 42003.9 Da    PI: 7.6868
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00095genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.9e-1771115147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +W++eE+e++++a k++G g W+ I +++g ++++ q++s+ qk+
       AA39G00095  71 REKWSEEEHERFLEALKLYGRG-WRQIEEHIG-TKSAVQIRSHAQKF 115
                      789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1565120IPR009057Homeodomain-like
PROSITE profilePS5129420.42566120IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-868117IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-1569118IPR006447Myb domain, plants
SMARTSM007173.0E-1270118IPR001005SANT/Myb domain
PfamPF002493.2E-1471114IPR001005SANT/Myb domain
CDDcd001671.33E-1073116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGSWICDLVL SLPLKLHRVY SMANLDRSEE LCSNVEYGSC SSNGGTNSES TNHWIENVVK  60
IRKPYTITKQ REKWSEEEHE RFLEALKLYG RGWRQIEEHI GTKSAVQIRS HAQKFFSKVA  120
REANNGRRGS DRAVAIPPPR PKRKPSHPYP RKSPCPNLSA MERGTKSPTS VLSAFASDNP  180
DDNNLHGCSS PNSCTTDIGR TSIDKENDNA TSKQLPKDSN LPSQHVSPIV SPPISSITLF  240
GKTVLVMESP RSDDDDLETM NQYSEITKSS LQIDSRHVDT DLSLGVDMNL KAGVLETSCT  300
GSNAQGSVIE ISDNLERSVE PVTSPWQRLS SLQRQPSCCS ANGFRPYKRC LSEREVTSSF  360
YVVTSEEHES RRARVCS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA39G00095
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416617.11e-141protein REVEILLE 7
SwissprotB3H5A81e-141RVE7_ARATH; Protein REVEILLE 7
TrEMBLV4KB811e-140V4KB81_EUTSA; Uncharacterized protein
STRINGXP_006416617.11e-141(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.21e-119MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]