PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA38G00115 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ZF-HD | ||||||||
Protein Properties | Length: 218aa MW: 23765.4 Da PI: 8.3313 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 94 | 1.3e-29 | 16 | 68 | 2 | 59 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++v YkeClkNhAa+lGgha+DGCgEfm+++ ++l+CaACgCHRnFHRr++++ AA38G00115 16 MGVSYKECLKNHAANLGGHALDGCGEFMSNP-----NSSLTCAACGCHRNFHRRDNNN 68 5799*************************93.....468***************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-12 | 18 | 57 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.1E-24 | 18 | 66 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.7E-26 | 20 | 65 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.241 | 20 | 65 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.22E-18 | 118 | 191 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.9E-26 | 122 | 191 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.9E-28 | 131 | 188 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDSCSELKQK DSDQEMGVSY KECLKNHAAN LGGHALDGCG EFMSNPNSSL TCAACGCHRN 60 FHRRDNNNNL SFVQTPNSSP SATELSPPLQ PIASPVPCSY YTSAPHVLLS LSSSGFPSGP 120 SDNTNRTRGV RKRTRTKFTG DQKVKMRGFA EKAGWKINGC DEKLVKEFCD EIGIERSVLK 180 VWMHNNKYSL RDSTTNLSLT TNNNGVHTAL SPDASSSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 8e-19 | 130 | 189 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the up-regulation of several stress-inducible genes. Acts as a transcriptional activator by interacting with MED25 and NAC proteins. Involved in increased drought tolerance. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:17233795}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA38G00115 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by abscisic acid and by drought and salt stress. Not induced by cold. {ECO:0000269|PubMed:17233795}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006302745.1 | 9e-88 | zinc-finger homeodomain protein 11 | ||||
Refseq | XP_010512006.1 | 6e-88 | PREDICTED: zinc-finger homeodomain protein 11-like isoform X1 | ||||
Refseq | XP_019101642.1 | 6e-88 | PREDICTED: zinc-finger homeodomain protein 11-like isoform X2 | ||||
Swissprot | Q9SEZ1 | 2e-88 | ZHD11_ARATH; Zinc-finger homeodomain protein 11 | ||||
TrEMBL | R0IFT8 | 2e-86 | R0IFT8_9BRAS; Uncharacterized protein | ||||
STRING | XP_006302745.1 | 3e-87 | (Capsella rubella) | ||||
STRING | XP_010512007.1 | 2e-87 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5166 | 25 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 1e-63 | zinc finger homeodomain 1 |
Publications ? help Back to Top | |||
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