PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA36G00036 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 217aa MW: 25923.3 Da PI: 7.1984 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.3 | 7.6e-18 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W +eEde+lv+ v++lG ++W++ ar g++R++k+c++rw +yl AA36G00036 11 RGPWLEEEDEKLVKFVTLLGERRWDSLARVSGLKRSGKSCRLRWMNYL 58 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.4e-16 | 65 | 108 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+ +++E+++++++++++G++ W++Iar+++ gRt++++k++w+++ AA36G00036 65 GPISKDEELIIIQLHALWGNK-WAKIARRLP-GRTDNEIKNYWRTH 108 67799****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.238 | 6 | 58 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-14 | 10 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.68E-27 | 10 | 105 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-14 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-20 | 12 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.47E-9 | 13 | 58 | No hit | No description |
PROSITE profile | PS51294 | 26.015 | 59 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 5.5E-16 | 63 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.4E-15 | 65 | 108 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.45E-10 | 66 | 109 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 66 | 112 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDYVKKEFVR RGPWLEEEDE KLVKFVTLLG ERRWDSLARV SGLKRSGKSC RLRWMNYLHP 60 SLKHGPISKD EELIIIQLHA LWGNKWAKIA RRLPGRTDNE IKNYWRTHFR KKEQPQIYGE 120 ISMTRKTHEH VLKKNQTSLE DDQERYVGIF ERESLCVLNS PYENRILDWI SEISTDQSEA 180 NLVEDHSCSN NEQNIDIGSW WLQETRDFVE FSSTLWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 8e-26 | 11 | 112 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA36G00036 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006293114.1 | 1e-105 | transcription factor MYB27 | ||||
Swissprot | Q9SCP1 | 1e-103 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | R0FT62 | 1e-104 | R0FT62_9BRAS; Uncharacterized protein | ||||
STRING | XP_006293114.1 | 1e-105 | (Capsella rubella) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11397 | 25 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53200.1 | 1e-105 | myb domain protein 27 |
Publications ? help Back to Top | |||
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