PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G01061
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family TALE
Protein Properties Length: 423aa    MW: 48277.1 Da    PI: 6.6133
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G01061genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.73.9e-083593961954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 F++  ++yp+ +e+  LA + gL+ +qV++WF N R +
  AA32G01061 359 FHNflHPYPKDSEKHLLAIRSGLSRSQVSNWFINARVR 396
                 776679******************************88 PP
2BELL772.7e-25246312572
        BELL   5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  ++kka+Ll+ll++Vd+ Y+++ ++++tv+s+F+a+++l++ +++t++Al+aiS  + +L+++i++qi
  AA32G01061 246 SEAKKAQLLNLLQMVDDGYSHCIDEIHTVVSAFHAATELDP-RLHTRFALQAISVLYNNLRERISNQI 312
                 689**************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-24183310IPR006563POX domain
PfamPF075262.6E-22189309IPR006563POX domain
PROSITE profilePS5007111.013337400IPR001356Homeobox domain
CDDcd000861.71E-10340401No hitNo description
Gene3DG3DSA:1.10.10.601.0E-24340414IPR009057Homeodomain-like
SMARTSM003894.3E-5340404IPR001356Homeobox domain
SuperFamilySSF466897.7E-15341408IPR009057Homeodomain-like
PfamPF059201.8E-14357396IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MDNNNKFSSL EDVSNQNAIM NGMSLMDQNH SNSLKDFDPF STFFPWNTMR SDPLHLDAVN  60
DLLANNLSAS MDDQENPSFQ GMVPQFPHSL DHLRPPYPYA FEGFGNRNNE IWDFSANGGF  120
PVPGFTLPVT DNTNELSLSL ATFHPDNNSD QCSEISLCPT TTRRLISEQA SCSSSKDPCN  180
VPTGFPQFIS ESKYLNSVQE ILTQFARYSL KDSAVTPSYD HFTEFLDGEI DYNATVVSSG  240
PKPHTSEAKK AQLLNLLQMV DDGYSHCIDE IHTVVSAFHA ATELDPRLHT RFALQAISVL  300
YNNLRERISN QILMIVQVKG KGKENSFLHQ QIRQRNNQLW RPQRGLPEKS VSVLRAWMFH  360
NFLHPYPKDS EKHLLAIRSG LSRSQVSNWF INARVRLWKP MIEEMYVEMK KRKSKQDHDK  420
NRG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G01061
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875138.11e-137homeobox protein ATH1
SwissprotP487311e-131ATH1_ARATH; Homeobox protein ATH1
TrEMBLD7M9B91e-135D7M9B9_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.7__829__AT4G32980.11e-136(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82282637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.11e-128homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]