PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA32G00937

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

FAR1

Protein Properties

Length: 868aa MW: 98195 Da PI: 7.1436

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA32G00937	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	31	8.3e-10	63	134	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+eY++++ F+ + + k++g+i ++fvCs + + + +C+a+++++++ ++kw+vtk+++eH H la AA32G00937 63 SFYDEYSRSLAFTYKLLH----KTDGSISAQEFVCSSKRPKGRPAG--------------SCDAMVRIEMKGQDKWVVTKFVKEHAHGLA 134 59********999987....45789****98776666555..............5************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-5	95	134	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-23	266	357	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.695	544	580	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-9	549	578	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.3E-8	555	582	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009506	Cellular Component	plasmodesma
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 868 aa Download sequence Send to blast
MDVHVVNEGE PMENRGISND GDAKPSDSNE PNNIENSLGI QDESGVAEPY VGMEFNSEKA 60 AKSFYDEYSR SLAFTYKLLH KTDGSISAQE FVCSSKRPKG RPAGSCDAMV RIEMKGQDKW 120 VVTKFVKEHA HGLASSNTLH CIRPRRHFAN SEKSTPGSYQ RGVNVPSGMM YVSMDGNHVP 180 SESNNRVARI VSKDSNRGTG FVHMATNTKR TLGRDAHNLL EYLKRMQAEN PGFFYAIQLD 240 EDNQMTNVFW ADSRSRIAYS HFGDTVTIDT RYKCNKFRVP FCPFTGVNHH GQTILFGCAL 300 ILDDSEASFI WLFKTFLTAM RDHPPVSLVT DQDRAIQLAV AQVFPGVRHC INKWDVLREG 360 QEKLAHACLA FSSFQVELYN CINYTESIEE FESSWSSIIE KYDLGRHEWL SSIYNARAQW 420 VPVYFRDSFF AAVFPGQSYP GSFFDRYVNQ QTTLPMFFRL YERAMESWFE MEIEADFETV 480 NTPPVLKTPS PMENQAANLF TRKIFAKFQE ELVETFVYTA NRIDGNGTTS TFRVAKFEND 540 NKAYMVTFCY PEMRANCSCQ MFEHSGILCR HVLTVFTVTN VLTLPPQYIL RRWTRNAKSV 600 VGLDERVVED RHDSLTHRYN HLCREAIRYA EEGAITTETY NIALGALKEG GKKISVVKKN 660 IGTAPRSSHG GSDAKTALSA ADTTPSLWPH QDEMTRRFSL NVGGFRAQSV ADLNLPRMAP 720 VSLHRDDGAP EDMGALPCLK SMTWDMENKS TMPGGRVAVI NLKLHDYRKF PSGDMDVKFQ 780 LSSLTLEPML KSMAYISEQL SAPANRVAVI NLKLQDTETT SGESEVKFQV SRDTLAAMLR 840 SMAYIREQLS IVGEPQTETQ AKKQRKLR

Sequence ? help Back to Top

Protein Sequence Length: 868 aa Download sequence Send to blast

MDVHVVNEGE PMENRGISND GDAKPSDSNE PNNIENSLGI QDESGVAEPY VGMEFNSEKA  60
AKSFYDEYSR SLAFTYKLLH KTDGSISAQE FVCSSKRPKG RPAGSCDAMV RIEMKGQDKW  120
VVTKFVKEHA HGLASSNTLH CIRPRRHFAN SEKSTPGSYQ RGVNVPSGMM YVSMDGNHVP  180
SESNNRVARI VSKDSNRGTG FVHMATNTKR TLGRDAHNLL EYLKRMQAEN PGFFYAIQLD  240
EDNQMTNVFW ADSRSRIAYS HFGDTVTIDT RYKCNKFRVP FCPFTGVNHH GQTILFGCAL  300
ILDDSEASFI WLFKTFLTAM RDHPPVSLVT DQDRAIQLAV AQVFPGVRHC INKWDVLREG  360
QEKLAHACLA FSSFQVELYN CINYTESIEE FESSWSSIIE KYDLGRHEWL SSIYNARAQW  420
VPVYFRDSFF AAVFPGQSYP GSFFDRYVNQ QTTLPMFFRL YERAMESWFE MEIEADFETV  480
NTPPVLKTPS PMENQAANLF TRKIFAKFQE ELVETFVYTA NRIDGNGTTS TFRVAKFEND  540
NKAYMVTFCY PEMRANCSCQ MFEHSGILCR HVLTVFTVTN VLTLPPQYIL RRWTRNAKSV  600
VGLDERVVED RHDSLTHRYN HLCREAIRYA EEGAITTETY NIALGALKEG GKKISVVKKN  660
IGTAPRSSHG GSDAKTALSA ADTTPSLWPH QDEMTRRFSL NVGGFRAQSV ADLNLPRMAP  720
VSLHRDDGAP EDMGALPCLK SMTWDMENKS TMPGGRVAVI NLKLHDYRKF PSGDMDVKFQ  780
LSSLTLEPML KSMAYISEQL SAPANRVAVI NLKLQDTETT SGESEVKFQV SRDTLAAMLR  840
SMAYIREQLS IVGEPQTETQ AKKQRKLR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA32G00937

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006293662.1	0.0	protein FAR1-RELATED SEQUENCE 3 isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	R0HMV5	0.0	R0HMV5_9BRAS; Uncharacterized protein
STRING	Cagra.5679s0003.1.p	0.0	(Capsella grandiflora)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]