PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA32G00863 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | LBD | ||||||||
Protein Properties | Length: 232aa MW: 25366.7 Da PI: 4.6241 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 136.9 | 7.3e-43 | 49 | 148 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r+da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ AA32G00863 49 PCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKAQV 147 7**********************************************************************************************9986 PP DUF260 100 e 100 e AA32G00863 148 E 148 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.285 | 48 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-42 | 49 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MLKMEINGVA TPNASTAVTA VTDSVTPVSS PSPTSSPPQA QQPPVVLSPC AACKILRRRC 60 AEKCVLAPYF PPTDPAKFTI AHRVFGASNI IKFLQELPES QRTDAVNSMV YEAGARMRDP 120 VYGCAGAIYH LQRQVSELQA QLAKAQVELV NVQLQRSNLL ELIYKLDQPI NIISGQEQVV 180 VGQHNNMSLE SSFESGDDFI SSPEEESNEL GFLEDNVFNN NSSMSLWGPL WT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-41 | 44 | 151 | 6 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-41 | 44 | 151 | 6 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA32G00863 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189299 | 2e-40 | AC189299.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB028K05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_180417.2 | 1e-115 | LOB domain-containing protein 11 | ||||
Swissprot | Q9SK08 | 1e-116 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | R0FXT9 | 1e-112 | R0FXT9_9BRAS; Uncharacterized protein | ||||
STRING | AT2G28500.1 | 1e-115 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1141 | 28 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-108 | LOB domain-containing protein 11 |