PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00860
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family Dof
Protein Properties Length: 204aa    MW: 22856.8 Da    PI: 9.7464
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00860genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.37.1e-384197662
      zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                +kcprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+r+nk+++
  AA32G00860 41 QKCPRCDSLNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRRNKRNN 97
                79****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088429.1894195IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-234190IPR003851Zinc finger, Dof-type
PfamPF027018.1E-334195IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104379IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSNETLETIL VSSSKRGNYK NNMKIEEEKK KGMIKGGEGG QKCPRCDSLN TKFCYYNNYS  60
LSQPRYFCKS CRRYWTKGGT LRNVPVGGGC RRNKRNNNNT HKPPLLATSS FSYHLSPPPP  120
SFAFGERLFE GQNGHFVNNG GILSLEVDIE RKQELMNGDK TLWGFPWQMI GDSSGVGPEI  180
DAGRERWING FGSSWGGLLN TSLV
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00860
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892993e-57AC189299.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB028K05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884919.12e-59dof zinc finger protein DOF2.1
SwissprotQ8LE435e-56DOF21_ARATH; Dof zinc finger protein DOF2.1
TrEMBLD7LJK04e-58D7LJK0_ARALL; Uncharacterized protein
STRINGCagra.12068s0002.1.p5e-59(Capsella grandiflora)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69602743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28510.12e-50Dof family protein