PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00857
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family AP2
Protein Properties Length: 472aa    MW: 51768.5 Da    PI: 7.526
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00857genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.9e-17158207155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  AA32G00857 158 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 207
                 78*******************......55************************997 PP
2AP240.19e-13250297152
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                 s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k
  AA32G00857 250 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIK 297
                 89********.7******5553..2.26**********99*********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.4E-9158207IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16158216IPR016177DNA-binding domain
SMARTSM003803.0E-32159221IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.4E-17159215IPR001471AP2/ERF domain
PROSITE profilePS5103217.899159215IPR001471AP2/ERF domain
CDDcd000189.10E-11159214No hitNo description
PfamPF008473.5E-8250297IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-16250309IPR016177DNA-binding domain
CDDcd000182.51E-24250310No hitNo description
SMARTSM003805.2E-31251314IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-15251308IPR001471AP2/ERF domain
PROSITE profilePS5103215.527251308IPR001471AP2/ERF domain
PRINTSPR003677.2E-6252263IPR001471AP2/ERF domain
PRINTSPR003677.2E-6290310IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MLDLNLEADS PGSTNYGESY ADRKTSDVSG NRTEESGTST SSVINADDFS FSGGNDDSDS  60
TQAFTLNFDI LKVGSSSGGD ECPSSSAGLT KELFPVAGDC RHLRDSEGSS SRSWMNLSFN  120
RMSFVGGGDT KEVPPVPVPV PVPNQVKKSR RGPRSRSSQY RGVTFYRRTG RWESHIWDCG  180
KQVYLGGFDT AHAAARAYDR AAIKFRGVDA DINFSINDYE EDMKQVQNLS KEEFVHILRR  240
QSTGFSRGSS KYRGVTLHKC GRWEARMGQF LGKKYIYLGL FDSEVEAARA YDKAAIKSNG  300
REAVTNFEPS SYESGMSSEA INQGGRDKLD LNLGISLSSG NVSKQDGRGF RYPPSPYETQ  360
QGIGNQFTGK STNAAPYGSL DHRVYWNNGA CPSYNPLEGR SIEKRSERDN VGEGMMMMSN  420
WGWQRPQEPP PLFSAAAAAA VAAASSGFSS PSTHFRQPQN GDASRGYFYQ QX
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00857
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006296222.10.0ethylene-responsive transcription factor RAP2-7 isoform X1
SwissprotQ9SK030.0RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLR0HUN30.0R0HUN3_9BRAS; Uncharacterized protein
STRINGXP_006296222.10.0(Capsella rubella)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58612747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.30.0related to AP2.7