PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA32G00676
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 402aa    MW: 45116.5 Da    PI: 6.0244
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA32G00676genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.95.7e-30173230260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgy WrKYGqK+vk+se+prsY++Ct+++C +kk ve+++ d++v+ei+Y+g Hnh+k
  AA32G00676 173 DDGYGWRKYGQKQVKKSENPRSYFKCTYPNCVSKKIVETAS-DGQVTEIIYKGGHNHPK 230
                 8***************************************9.***************85 PP
2WRKY1031.6e-32338394359
                 -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 Dg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+versa+d+++v +tYeg+Hnh+
  AA32G00676 338 DGFRWRKYGQKVVKGNTNPRSYYKCTYQGCGVRKQVERSADDERAVLTTYEGRHNHD 394
                 9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-25162231IPR003657WRKY domain
SuperFamilySSF1182904.18E-23169231IPR003657WRKY domain
SMARTSM007745.5E-31172230IPR003657WRKY domain
PfamPF031061.7E-22173229IPR003657WRKY domain
PROSITE profilePS5081120.782173231IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-34321396IPR003657WRKY domain
SuperFamilySSF1182901.7E-28328396IPR003657WRKY domain
PROSITE profilePS5081133.993331396IPR003657WRKY domain
SMARTSM007745.7E-38336395IPR003657WRKY domain
PfamPF031061.1E-25338394IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MSSTTFTDLL ASSGVDGYDD EDDFQASGSF SLYPDGEYPE RTGSGLPKFK TAQPPPLPIS  60
QSSHLAASDF LDSPLLLSSS HTLISPTTGA YPFQGFNGTT HHSDFLWLQQ HQIQPSNPSI  120
LQETYSFQNV QKQEVLATEQ VPISYEITGQ NNQLDERQRQ GRVPSYMVSR NSDDGYGWRK  180
YGQKQVKKSE NPRSYFKCTY PNCVSKKIVE TASDGQVTEI IYKGGHNHPK PEFSKRPSAS  240
SSSSSCLASN ARRLFNPSVS ETHDQSENSS ISFDYSDLEQ RGLKSEEIEG EEDESVTKSF  300
CNRKREAEDE GMSVEVSRGV KEPRVVVQTI SDIDVLIDGF RWRKYGQKVV KGNTNPRSYY  360
KCTYQGCGVR KQVERSADDE RAVLTTYEGR HNHDIPTSLR RS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-32173396877Probable WRKY transcription factor 4
2lex_A3e-32173396877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00282DAPTransfer from AT2G30250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA32G00676
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529341e-104AK352934.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-12-D15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410139.10.0probable WRKY transcription factor 25
SwissprotO229210.0WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLA0A087FWF30.0A0A087FWF3_ARAAL; Uncharacterized protein
STRINGA0A087FWF30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116031733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.11e-178WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]