PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA32G00667

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

LBD

Protein Properties

Length: 263aa MW: 28546.2 Da PI: 8.4842

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA32G00667	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.6	5e-39	55	154	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdPvyG++g i++l++++++l+++l+++++ AA32G00667 55 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPVYGCMGAISALHHHINSLQSQLSAVRT 153 7**********************************************************************************************9998 PP DUF260 100 e 100 e AA32G00667 154 E 154 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.067	54	155	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-40	55	152	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016020	Cellular Component	membrane

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MSREREEFGE YYEIVKKIKK DQSFETTPDH VVMGIKRHVA APPLPLGTTL NTVTPCAACK 60 LLRRRCAEEC PFSPYFSPHE PHKFAAVHKV FGASNVSKML LEVGESQRGD AANSLVYEAN 120 LRLRDPVYGC MGAISALHHH INSLQSQLSA VRTEILRHKY RQANNNNNNF IITSSTSVSD 180 AQAALALLLP SGLASPPPPL RSQMNSAPPP LTPPPSLPSP SIVVSSSSTS SNSSATNSMY 240 NPPSSAAGFN NSMSSDNNLH FFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-40	48	158	4	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-40	48	158	4	114	LOB family transfactor Ramosa2.1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00283	DAP	Transfer from AT2G30340	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA32G00667

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433132.1	1e-113	PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 13
Swissprot	Q9AT61	1e-111	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A087G3R6	1e-111	A0A087G3R6_ARAAL; Uncharacterized protein
STRING	A0A087G3R6	1e-112	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-106	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]