PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AA32G00481

Organism

Aethionema arabicum

Taxonomic ID

228871

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema

Family

FAR1

Protein Properties

Length: 806aa MW: 92441.6 Da PI: 6.9452

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AA32G00481	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.9	5.9e-22	57	142	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA++vGF +++++s++skr+g++++ + Cs+ g+++++++ +t + +tgC+a l++k+++d+kw + +++++HnHe++p AA32G00481 57 FYREYARSVGFGITIKASRRSKRSGKFIDVKIACSRFGTKRKSDTV----LNTGSCPKTGCQAGLHMKRKEDEKWIICNFVKDHNHEICP 142 9************************************9998877....899999*****************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-19	57	142	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-25	224	317	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.916	502	540	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.6E-8	504	537	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.8E-8	515	542	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 806 aa Download sequence Send to blast
MDVENLEVDL VTRIGNVDDF CETSTSGNAA SSLEQFATLG EPRNGVEFES KEAAYYFYRE 60 YARSVGFGIT IKASRRSKRS GKFIDVKIAC SRFGTKRKSD TVLNTGSCPK TGCQAGLHMK 120 RKEDEKWIIC NFVKDHNHEI CPDDFDVTIR GKNKPAGALE HQKKGLQLAL EEEDVKLMLE 180 YFMDMQNKQP GFFYAVDLNS EKRITNVIWL DAKSKHDYAK FSDVVLFDTF YVRNGYRVPV 240 APFVGVSHHR KYVLLGCALI GEESTSTYSW LFRMWLKAVG GQAPGVMITD QDKHLSNIVA 300 EVFPSAHHCF CFWNIVSKIP EMVNPFLSQD DGFMESFRKC IHNSWTDEQF ERKWSKMIDK 360 FELNKNEWLH LLFRDREKWV PYYFDKICLV GMSGPDRSTS IASHFDKYIN SNATFKDFFE 420 LYMKFMQYRC DVEANDDLES ESKHPTLRSP LAFEKQLSMI YTDTAFKKFQ AEVLGVVSCK 480 LQKERENGTT TIFCVEDFEE RQNFFVAWNK GLLDVRCSCR LFEYQGFLCK HAILVLQNSD 540 VSCIPPQYIL KRWSKNANNK EDKNKKCATI HNQMARFDDL CRRFVKLGEV ASLSDEAYKT 600 ALKFMEESLK HLVSVNNSSK FHSESEKLLT GGSIDLVDNA SKFPKKKKIH KKRKVYYGPE 660 DATSRPEELC QDTEQVNSRA PPTFDNCYIP QADLGESELG SRAANLGVYY PNQQTIQGFS 720 AVPPLQDGYY GHPPAIQAMV NLQSSNVRMN QYETRPNFQG AEQRSFRGSA ARGCYDVEET 780 LDDMTMESSE FQSSGPSNLS DQRLSH

Sequence ? help Back to Top

Protein Sequence Length: 806 aa Download sequence Send to blast

MDVENLEVDL VTRIGNVDDF CETSTSGNAA SSLEQFATLG EPRNGVEFES KEAAYYFYRE  60
YARSVGFGIT IKASRRSKRS GKFIDVKIAC SRFGTKRKSD TVLNTGSCPK TGCQAGLHMK  120
RKEDEKWIIC NFVKDHNHEI CPDDFDVTIR GKNKPAGALE HQKKGLQLAL EEEDVKLMLE  180
YFMDMQNKQP GFFYAVDLNS EKRITNVIWL DAKSKHDYAK FSDVVLFDTF YVRNGYRVPV  240
APFVGVSHHR KYVLLGCALI GEESTSTYSW LFRMWLKAVG GQAPGVMITD QDKHLSNIVA  300
EVFPSAHHCF CFWNIVSKIP EMVNPFLSQD DGFMESFRKC IHNSWTDEQF ERKWSKMIDK  360
FELNKNEWLH LLFRDREKWV PYYFDKICLV GMSGPDRSTS IASHFDKYIN SNATFKDFFE  420
LYMKFMQYRC DVEANDDLES ESKHPTLRSP LAFEKQLSMI YTDTAFKKFQ AEVLGVVSCK  480
LQKERENGTT TIFCVEDFEE RQNFFVAWNK GLLDVRCSCR LFEYQGFLCK HAILVLQNSD  540
VSCIPPQYIL KRWSKNANNK EDKNKKCATI HNQMARFDDL CRRFVKLGEV ASLSDEAYKT  600
ALKFMEESLK HLVSVNNSSK FHSESEKLLT GGSIDLVDNA SKFPKKKKIH KKRKVYYGPE  660
DATSRPEELC QDTEQVNSRA PPTFDNCYIP QADLGESELG SRAANLGVYY PNQQTIQGFS  720
AVPPLQDGYY GHPPAIQAMV NLQSSNVRMN QYETRPNFQG AEQRSFRGSA ARGCYDVEET  780
LDDMTMESSE FQSSGPSNLS DQRLSH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	AA32G00481

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024004256.1	0.0	protein FAR1-RELATED SEQUENCE 2 isoform X1
Swissprot	Q3EBQ3	0.0	FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBL	A0A1J3K3V3	0.0	A0A1J3K3V3_NOCCA; Protein FAR1-RELATED SEQUENCE 2
STRING	XP_010510061.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32250.4	0.0	FAR1-related sequence 2

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]