PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA32G00417 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 28227.3 Da PI: 10.374 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.9 | 3.3e-07 | 83 | 130 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r h + Er RRd+ ++++ L +llP +K +K +i+ekAv+ I +Lq AA32G00417 83 RRHMIKERIRRDKQKQSYLDLHSLLPIH-----TKSDKKTIVEKAVNQIGDLQ 130 458999*********************9.....8***************9998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-10 | 75 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.738 | 80 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.54E-6 | 83 | 134 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.6E-7 | 84 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-5 | 85 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-5 | 86 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MDHFFQDPIN WEENTLWDLV SGDGDKTVSP VNRRAFRAYV REPQESKTAA VSARNVNKRM 60 LNLVRKNWEE KKRAAAPERE KGRRHMIKER IRRDKQKQSY LDLHSLLPIH TKSDKKTIVE 120 KAVNQIGDLQ RLKRELERRI KALERKLDGK TEMCGRREVK FNVREPLSGI DSMIEVVKCL 180 KSMGTNLKSV HANFSSREFA ANITIETQIR EEEVEKTVER RLHETEWKLL FLPEAPFHGD |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA32G00417 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020868383.1 | 1e-95 | transcription factor bHLH92 | ||||
Swissprot | Q9FIX5 | 4e-96 | BH092_ARATH; Transcription factor bHLH92 | ||||
TrEMBL | A0A178ULD2 | 3e-95 | A0A178ULD2_ARATH; BHLH92 | ||||
STRING | fgenesh2_kg.390__1__AT5G43650.1 | 4e-95 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9602 | 25 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G43650.1 | 8e-80 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|