PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA31G00506 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 29431.5 Da PI: 6.5093 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+lv ++++ G g+W++ + + g+ R++k+c++rw++yl AA31G00506 14 KGEWTAEEDEKLVAYINENGIGDWRLMPTRAGLQRCGKSCRLRWLNYL 61 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.9 | 1e-17 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+e +++ + ++G++ W++Ia+ m+ +Rt++++k++w++ AA31G00506 67 RGKFTPQEEESIIHFHSLHGNR-WAAIAKLMP-NRTDNDIKNYWNS 110 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.485 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-23 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.37E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.398 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.17E-11 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MVRTTWLDVD GMKKGEWTAE EDEKLVAYIN ENGIGDWRLM PTRAGLQRCG KSCRLRWLNY 60 LRPGIKRGKF TPQEEESIIH FHSLHGNRWA AIAKLMPNRT DNDIKNYWNS RLKKRLAKSG 120 INPMTHKPVL TNVEPSSSIS TTGSSPCTPI SCSSKSNELL NKLATMISSK KEEIDKIKSV 180 IMCREVITNK DEKINFDVCM DWDELEQEME LEGCLIGTST STKTTSFDGS LGLVDELYGI 240 EQCGFYDTTT HESDHFLLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-25 | 14 | 116 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA31G00506 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006390428.1 | 1e-88 | transcription factor MYB106 | ||||
TrEMBL | V4K9J5 | 2e-87 | V4K9J5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006390428.1 | 4e-88 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74430.1 | 8e-77 | myb domain protein 95 |