PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA31G00498 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | Nin-like | ||||||||
Protein Properties | Length: 243aa MW: 28220.1 Da PI: 8.2093 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.1 | 5.6e-26 | 101 | 151 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k +s e++s+yF++pi++AA eL+v+lT+LKr+CR++GI+RWPhRk+ sl AA31G00498 101 SKALSKETISRYFYMPITQAAMELNVGLTLLKRRCRELGIRRWPHRKLMSL 151 5889********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.962 | 86 | 171 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.9E-21 | 104 | 151 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MADQEERPFS FLNQSLSFDW EDELLALHNN SVSLTFPWTV TTSLSLPDLE SFSALSPDIL 60 DSYGLESSKE TEKNRGNGDL EKKKAEETKI MEMQRDHELD SKALSKETIS RYFYMPITQA 120 AMELNVGLTL LKRRCRELGI RRWPHRKLMS LQTLIRNVKF SVQELQKMER EENKGKLRNA 180 VEMLEKEKKT MEELPDLEFE DKTKRLRQAC FKANHKRKKR SLSLKEQSLT SYASSSSDGS 240 VTS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00234 | DAP | Transfer from AT1G74480 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA31G00498 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428433.1 | 3e-93 | PREDICTED: protein RKD2 | ||||
Swissprot | Q9CA66 | 3e-84 | RKD2_ARATH; Protein RKD2 | ||||
TrEMBL | V4M983 | 7e-87 | V4M983_EUTSA; Uncharacterized protein | ||||
STRING | XP_010428433.1 | 1e-92 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3966 | 23 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74480.1 | 1e-76 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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