PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA31G00019 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | ZF-HD | ||||||||
Protein Properties | Length: 181aa MW: 20068.7 Da PI: 8.2176 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.9 | 4.9e-33 | 15 | 69 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +++YkeClkNhA+++GghavDGC+Efmps ge+gt ++lkCaACgCHRnFHR+e++ AA31G00019 15 AIKYKECLKNHAVNIGGHAVDGCCEFMPS-GEDGTLDSLKCAACGCHRNFHRKETD 69 689*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-25 | 16 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 9.5E-31 | 16 | 68 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 3.2E-30 | 17 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.243 | 18 | 67 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-30 | 110 | 180 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.47E-20 | 110 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 5.1E-29 | 123 | 180 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEIQEHEEQT SSCGAIKYKE CLKNHAVNIG GHAVDGCCEF MPSGEDGTLD SLKCAACGCH 60 RNFHRKETDV GKARIPTYYT RTPQLPPPGN LYRPLALPAS GGDEEDTSNP SSSGGGGGDG 120 GRKKRFRTKF TAEQKEKMLG FAEKLGWRIQ KHDDLEVEQF CAETGVRRKV LKIWMHNNKK 180 V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-32 | 124 | 179 | 18 | 73 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA31G00019 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009138327.1 | 2e-92 | PREDICTED: zinc-finger homeodomain protein 2 | ||||
Swissprot | Q9SB61 | 7e-85 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | M4DBG2 | 4e-91 | M4DBG2_BRARP; Uncharacterized protein | ||||
STRING | Bra013822.1-P | 7e-92 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-83 | homeobox protein 22 |
Publications ? help Back to Top | |||
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