PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA30G00317 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | bHLH | ||||||||
Protein Properties | Length: 211aa MW: 23699.7 Da PI: 10.7539 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 60 | 106 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+ +ErrRR riN+ f++Lr++lP++ K +Ka +L ++v+Y ++L AA30G00317 60 KKHSDAERRRRLRINNQFATLRTILPNL-----IKQDKAYVLGETVRYFNEL 106 68*************************9.....69*************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.68E-13 | 48 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.284 | 57 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.1E-10 | 60 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.71E-8 | 60 | 111 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.6E-13 | 61 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-9 | 63 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MVFLQHLEQG IRPISRCYDP TTYSTMRRNL YSATTSSKLF YRGSITKPKS KIESKEVAAK 60 KHSDAERRRR LRINNQFATL RTILPNLIKQ DKAYVLGETV RYFNELKKKV KDIPTTPALE 120 DSLRLGHCNK DIAKVVFNCS DREGLISELT EAIKSAKAKP VRAEFMTIGG RTKCALFLQG 180 VNGNEGLIKL KKTLKPVVNG KSSIAKNIIG G |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA30G00317 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006411819.1 | 1e-110 | transcription factor bHLH131 | ||||
Swissprot | P0CB25 | 1e-103 | BH131_ARATH; Transcription factor bHLH131 | ||||
TrEMBL | D7M9K5 | 1e-114 | D7M9K5_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0007_233 | 1e-114 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13939 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38070.1 | 4e-98 | bHLH family protein |