PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA30G00207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 20406.1 Da PI: 5.0157 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 105.3 | 4.9e-33 | 5 | 104 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaC +l++kC+++Cv+ pyfp++q++kf+ + ++FG++++l ++++lp +++++a++sl y Aear+rdP +Gavg+++++qq+ e+l + +++++e AA30G00207 5 SCAACEHLNQKCNDQCVFKPYFPQTQQQKFELIYQVFGTKKLLDIITNLPSSQHKNAINSLHYLAEARIRDPLEGAVGILKHYQQNNEKLLKRVHAARE 103 6*****************************************************************************************999999887 PP DUF260 100 e 100 + AA30G00207 104 K 104 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.666 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.9E-30 | 5 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MDSLSCAACE HLNQKCNDQC VFKPYFPQTQ QQKFELIYQV FGTKKLLDII TNLPSSQHKN 60 AINSLHYLAE ARIRDPLEGA VGILKHYQQN NEKLLKRVHA AREKLAALVG IDNVPKFPDL 120 QTPMNNDFPD ISMCLPFHVD EDIDFSQTLI NQEEIVEDLE VKLTNLTVDN HDASSSSAQP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-23 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-23 | 6 | 105 | 12 | 111 | LOB family transfactor Ramosa2.1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA30G00207 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35900.1 | 2e-31 | LOB domain-containing protein 35 |