PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA30G00169 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 88aa MW: 10238 Da PI: 10.5733 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.8 | 1.8e-20 | 3 | 47 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ksn vt+s+R+ gi+KKA+E ++LC+++++vi+fs++gk++ + AA30G00169 3 KKSNLLVTYSRRKSGIFKKASEFCTLCGVQILVILFSPSGKIFSF 47 588999***********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-14 | 1 | 50 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.563 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.19E-20 | 3 | 70 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.8E-20 | 3 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-8 | 13 | 28 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-8 | 28 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MNKKSNLLVT YSRRKSGIFK KASEFCTLCG VQILVILFSP SGKIFSFGHP NVRDRIDYFL 60 NRNYNHQFDV AILDLQKIKK LNDQLTKI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
UniProt | Probable transcription factor that controls female gametophyte (megagametogenesis) development and chloroplast biogenesis during embryo development. {ECO:0000269|PubMed:18346189}. | |||||
UniProt | Probable transcription factor that may function as a floral promoter operating upstream of known floral activators in the autonomous pathway. {ECO:0000269|PubMed:16899218}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA30G00169 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016581988.1 | 8e-27 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_016581993.1 | 8e-27 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
Swissprot | O80807 | 3e-23 | AGL23_ARATH; Agamous-like MADS-box protein AGL23 | ||||
Swissprot | Q9FKK2 | 5e-23 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9LMM8 | 4e-23 | AGL28_ARATH; Agamous-like MADS-box protein AGL28 | ||||
TrEMBL | A0A1U8HL60 | 2e-25 | A0A1U8HL60_CAPAN; agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1U8HL64 | 2e-25 | A0A1U8HL64_CAPAN; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A2G2UY02 | 6e-26 | A0A2G2UY02_CAPBA; Agamous-like MADS-box protein AGL62 | ||||
STRING | XP_009792225.1 | 1e-25 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65360.1 | 1e-25 | AGAMOUS-like 23 |