PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA30G00140
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 224aa    MW: 25554.8 Da    PI: 6.897
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA30G00140genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.58.8e-19152186135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  AA30G00140 152 CSHCGVQKTPQWRMGPLGAKTLCNACGVRFKSGRL 186
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.6E-781224IPR016679Transcription factor, GATA, plant
SuperFamilySSF577168.55E-14145208No hitNo description
PROSITE profilePS5011411.556146182IPR000679Zinc finger, GATA-type
SMARTSM004018.0E-15146200IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.105.3E-14150184IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440152177IPR000679Zinc finger, GATA-type
PfamPF003201.3E-16152186IPR000679Zinc finger, GATA-type
CDDcd002025.20E-15152208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MECREEIESF LNDFAVDDLL NLSDAVDVFD SSSSLSSSQR EKDDFGLEND QNTLVSPVED  60
LLSLPVDDLE ELEWLSNFVD DSYTSDEFPV NRSSKEVSVE VETRYIPVKP RSKRRRINGR  120
IWSPLGVSTA EEKIKKRGRK KREVSEHQRR CCSHCGVQKT PQWRMGPLGA KTLCNACGVR  180
FKSGRLLPEY RPACSPTFST KIHSNSHRKV LELRLMKTVE SSLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112116KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA30G00140
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_195347.12e-91GATA transcription factor 7
SwissprotO655152e-92GATA7_ARATH; GATA transcription factor 7
TrEMBLA0A178UWZ06e-90A0A178UWZ0_ARATH; GATA transcription factor
STRINGAT4G36240.19e-91(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146541720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.12e-86GATA transcription factor 7
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]