PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA2G00041
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB_related
Protein Properties Length: 299aa    MW: 33102.2 Da    PI: 9.3312
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA2G00041genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-12132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ +  ++G+g+W++I+r +   Rt+ q+ s+ qky
        AA2G00041 132 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 176
                      7*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.799161IPR017884SANT domain
SMARTSM007175.0E-4359IPR001005SANT/Myb domain
CDDcd001672.00E-5653No hitNo description
SuperFamilySSF466892.01E-6764IPR009057Homeodomain-like
PROSITE profilePS5129416.873125181IPR017930Myb domain
SuperFamilySSF466897.18E-17127182IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-17129179IPR006447Myb domain, plants
SMARTSM007172.3E-10129179IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-11130175IPR009057Homeodomain-like
PfamPF002497.3E-11132176IPR001005SANT/Myb domain
CDDcd001671.00E-9132177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MENVVTWSRE EEKAFENAIA MHWSIEEEIT DDQWRKMASM VPSKALEDLK KHYDILLEDV  60
NAIETGQVPL PRYHRRIDEP VATSPANKDC HSSASGSSEK KQNHGISGIS SSNGGGSRGG  120
SRAEQERRKG IPWTEEEHRL FLLGLDKFGK GDWRSISRNF VISRTPTQVA SHAQKYFIRL  180
NSMNRDRRRS SIHDITTVNN QAPAVTGQQV TKHRPAQTQS HPPTTTMAGL GMYGNAPVGQ  240
PIIAPPGHMG SAVGTPVMLP PPMGNHHHHI HHQVAPYAVP AYPVPPLPLP QHPAPSTMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-117731173RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA2G00041
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013588722.11e-156PREDICTED: transcription factor DIVARICATA
TrEMBLA0A078IHL31e-155A0A078IHL3_BRANA; BnaCnng16520D protein
TrEMBLA0A0D3CPE31e-155A0A0D3CPE3_BRAOL; Uncharacterized protein
STRINGBo6g018000.11e-155(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103042535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.11e-123MYB family protein