PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA29G00013
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family FAR1
Protein Properties Length: 763aa    MW: 87941.5 Da    PI: 8.2201
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA29G00013genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.95.2e-2144118189
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                 +fYn+YA ++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+++++++eHnHel
  AA29G00013  44 DFYNSYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGFQLN--------------SRTGCSAFIRVQRRDTGKWVLDQIQKEHNHEL 118
                 6***************************************876..............589***************************98 PP
2FAR1682.4e-21203279191
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 +fY++YA+ vGF+vr+ +  +sk +g+it+r+fvCskeg+++++              r+gC a +++k++++g w v++l+++HnHel p
  AA29G00013 203 QFYQAYAEIVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPS--------------RMGCGAYMRIKRQDSGGWIVDRLNKDHNHELEP 279
                 6***************************************9994..............799***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1644118IPR004330FAR1 DNA binding domain
PfamPF031018.4E-17203279IPR004330FAR1 DNA binding domain
PfamPF105511.9E-26374466IPR018289MULE transposase domain
PROSITE profilePS5096610.373649685IPR007527Zinc finger, SWIM-type
PfamPF044341.4E-8656682IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-8660687IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 763 aa     Download sequence    Send to blast
MVVKAYPLGM VRIMNNNGIG EDEGDSGIEP YVGLEFDTAE EARDFYNSYA ARTGFKVRTG  60
QLYRSRTDGT VSSRRFVCSK EGFQLNSRTG CSAFIRVQRR DTGKWVLDQI QKEHNHELGG  120
HIEETPRPSV QLRTPAPTKL PISVPHRPKM KVVDEADKGR SCPPGVISFK RFKGVEESDV  180
QTHPKATEPY AGLEFGSANE ACQFYQAYAE IVGFRVRIGQ LFRSKVDGSI TSRRFVCSKE  240
GFQHPSRMGC GAYMRIKRQD SGGWIVDRLN KDHNHELEPG KKNVGMKKIT EDVTGGLDSV  300
DLIELNDFST HISKPRENTI SKEWYSVLFD YFQSKQAEDM GFFYAVELDT NGSCMCIFWA  360
DSRARFACSQ FGDVVVFDTS YRKGNYSVPF ATFVGFNHHR QPVLLGGALV ADESKEAFSW  420
LFQTWLRAMS GRLPRSIIAD QDLAIQQAVA HVFPGTHHRF SAWQLRAKER ENLRSFPNDF  480
KYEYEKCIYQ TQTTVEFDAM WSALVNKYSL RDNLWLRELY EKRENWVPAY LRVSFFGGIP  540
VNGSFEPFFG TSLNPQTPLK EFISRYEQAL EQRREEERKE DFNSYNLQPF LQTKEAVEEQ  600
CRRLYTLTIF RIFQSELAQS YNYLGLKTYE EGPISRFLVR KCGNENEKHA VTFSASNLNA  660
SCSCQMFEYE GLLCRHILKV FNLLDIRELP SRYILHRWTK NAEFGFVRDV ESGVTSQDLK  720
ALMIWSLREA ASKYIEFGTS SLEKYKLAYE IMREGGKKLC WQR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA29G00013
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010464195.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 7 isoform X2
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLV4LFZ70.0V4LFZ7_EUTSA; Uncharacterized protein
STRINGBostr.2570s0035.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57302239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]