PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA289G00006
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family GATA
Protein Properties Length: 223aa    MW: 25890.6 Da    PI: 10.3512
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA289G00006genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA565.3e-18117151135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  AA289G00006 117 CMHCATEKTPQWRTGPMGPKTLCNACGVRYKSGRL 151
                  99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.1E-17111161IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.556111147IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-15113174No hitNo description
Gene3DG3DSA:3.30.50.108.4E-15115149IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.74E-13116163No hitNo description
PROSITE patternPS003440117142IPR000679Zinc finger, GATA-type
PfamPF003209.1E-16117151IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
FLEQNVVESP LNRSKICNRF NASAYKIYNL LSGLKIPQPN NLDRFKPEFE FKPITNTTKP  60
TNNSTCHEEV TIPAKARSKR SRSAASTWQS RLLAIEYGPK MKLFREKLEI TARERRCMHC  120
ATEKTPQWRT GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFELLRHSN SHRKVVELRR  180
QKQRQEDYLA MSKVDGEDVL MEVRSNGEDY LIINNVNNHF RQF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA289G00006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125288.12e-75PREDICTED: GATA transcription factor 9
RefseqXP_013666624.12e-75GATA transcription factor 9-like
SwissprotO826323e-67GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A398ALJ85e-74A0A398ALJ8_BRACM; GATA transcription factor
TrEMBLM4D4I95e-74M4D4I9_BRARP; GATA transcription factor
STRINGBra011393.1-P8e-75(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56822749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.14e-59GATA transcription factor 9
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]