PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA277G00003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | B3 | ||||||||
Protein Properties | Length: 156aa MW: 17950.2 Da PI: 6.6842 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.1 | 1.8e-14 | 15 | 99 | 1 | 96 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffk l + s+ +++p +f ++ ++ k++ + l++ +s r Wevkl ++++ lt+GW+eF a+ L++gD++vFk++g+ f +v + AA277G00003 15 FFKPL--LPGFYSH-IRIPDSFYSALvEETKRGY--VELRSdTSDRLWEVKL--EGQD----LTEGWEEFSLAHSLRVGDILVFKHEGNLVF--HVLM 99 56666..5566666.99******99976555565..555554999*******..8888....***********************8775555..5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.3E-20 | 6 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-19 | 12 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.534 | 12 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.16E-16 | 13 | 100 | No hit | No description |
SMART | SM01019 | 3.8E-20 | 15 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.5E-10 | 25 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MATPSSSSRS VNRHFFKPLL PGFYSHIRIP DSFYSALVEE TKRGYVELRS DTSDRLWEVK 60 LEGQDLTEGW EEFSLAHSLR VGDILVFKHE GNLVFHVLMF GSSFCEITFS PYLPENVNNV 120 NDGAKKGKRV KTEVGNSLSE NENNVEERVV KQFYRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA277G00003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013624170.1 | 7e-37 | PREDICTED: B3 domain-containing protein REM7-like | ||||
TrEMBL | A0A0D3BAN3 | 2e-35 | A0A0D3BAN3_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6AKW6 | 2e-35 | A0A3P6AKW6_BRAOL; Uncharacterized protein | ||||
STRING | Bo3g063950.1 | 3e-36 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31660.1 | 1e-37 | B3 family protein |