PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA277G00001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | B3 | ||||||||
Protein Properties | Length: 121aa MW: 13831.8 Da PI: 8.9969 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 44.2 | 3.4e-14 | 26 | 98 | 15 | 94 |
-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 15 rlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 l++pk f ++ ++ k+e +l+ + ++W+vk+ ++k+ lt+GWk+F +++L + D +vF+++g+ f +v AA277G00001 26 HLSIPKIFYAALvEERKKEYAELRTDASADKVWKVKM--EGKK----LTQGWKKFSLDHNLGVDDLLVFRHEGNLVF--NV 98 389*****9999966677788999999999*******..9999....***********************8776444..44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.2E-18 | 9 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-17 | 12 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.926 | 12 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.73E-11 | 13 | 101 | No hit | No description |
SMART | SM01019 | 1.5E-13 | 15 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-10 | 26 | 95 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MATSSSSSIS VNRYFIKPFL PGYYTHLSIP KIFYAALVEE RKKEYAELRT DASADKVWKV 60 KMEGKKLTQG WKKFSLDHNL GVDDLLVFRH EGNLVFNVLM FGPSGCEITF SNENNMETRG 120 N |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA277G00001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018489775.1 | 6e-32 | PREDICTED: B3 domain-containing protein REM7-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G32460.1 | 7e-34 | B3 family protein |