PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AA273G00003 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 162aa MW: 18546.8 Da PI: 8.8037 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.4 | 6.1e-14 | 7 | 55 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h e+E++RR+++ s ++ Lr+llP + ++K s ++ + +Av+YIk+++ AA273G00003 7 HREIEKQRRQEMSSLYASLRSLLPLEF--IQGKRSTSDQVNEAVNYIKYME 55 99***********************65..*******************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.256 | 2 | 54 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-13 | 5 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.84E-9 | 7 | 59 | No hit | No description |
Pfam | PF00010 | 4.2E-11 | 7 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-11 | 7 | 68 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-5 | 8 | 60 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence Send to blast |
MEKILVHREI EKQRRQEMSS LYASLRSLLP LEFIQGKRST SDQVNEAVNY IKYMEKKNKH 60 MNLKRDELIL KYGVSVENLN HVVVVVRPCL VGVEIVFSVL RTRLSSVLEV IKEHGLCVVS 120 CISSNVNNRV IYTIQAEVND LAFVDLGYLK DTLTLMVLNG LL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AA273G00003 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020873857.1 | 5e-68 | LOW QUALITY PROTEIN: transcription factor bHLH118 | ||||
Swissprot | Q9STJ7 | 2e-65 | BH118_ARATH; Transcription factor bHLH118 | ||||
TrEMBL | A0A1J3DAL8 | 3e-69 | A0A1J3DAL8_NOCCA; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A1J3G3E4 | 3e-69 | A0A1J3G3E4_NOCCA; Uncharacterized protein | ||||
TrEMBL | A0A1J3IUJ1 | 3e-69 | A0A1J3IUJ1_NOCCA; Uncharacterized protein | ||||
STRING | XP_010448440.1 | 7e-67 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4479 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G25400.1 | 1e-56 | bHLH family protein |