PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00657
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family M-type_MADS
Protein Properties Length: 267aa    MW: 30212.3 Da    PI: 7.4396
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00657genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.23.2e-1113451850
                HHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF 18 ngilKKAeELSvLCdaevaviifsstgklyeys 50
                +++  KA ELS+LC++ev++i ++ +g+++ ++
  AA26G00657 13 ETVTRKADELSILCGIEVCMISYGVNGEIKIFP 45
                67889************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.643148IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-101078IPR002100Transcription factor, MADS-box
PfamPF003191.9E-61541IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MTKRKSSEEL KEETVTRKAD ELSILCGIEV CMISYGVNGE IKIFPEDQRR VAAMASRFMK  60
LTEASRSKKS TSLDHILKDI QSEKTKAKKK QKKEEKVITV DPNLGSQFDS YSIDELKMKL  120
ESIGRKFQAI YEWRENMNEF NHGNFDPVIQ SVKAIAKVPS TPVQISEREE TTIDSSTPLS  180
SSPLDLGFQI TNYGNITTSS SPLFPPNLRF ESNNNESNNN KSNNIFRFED FGEEKLNLIG  240
ILGCDLKEMD HRLGIVKIIG SFRINGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00657
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-17AGAMOUS-like 103