PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00605
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family C3H
Protein Properties Length: 381aa    MW: 42863.1 Da    PI: 6.9666
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00605genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.98.1e-09104128126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykt+ C  f++ G C+ G+ C+FaHg
  AA26G00605 104 YKTRMCAKFRA-GACRNGELCNFAHG 128
                 9**********.*************9 PP
2zf-CCCH19.71.5e-061841981125
                 GTS.--TTTTT-SS-S CS
     zf-CCCH  11 rtG.tCkyGdrCkFaH 25 
                   G +C+yGdrC+F+H
  AA26G00605 184 F-GeECPYGDRCNFIH 198
                 5.449*********** PP
3zf-CCCH43.93.8e-14265291127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+lC+ f  tG+C++Gd+C+FaHg+
  AA26G00605 265 WKTRLCMKFEITGQCPFGDKCHFAHGQ 291
                 8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.8E-14101136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-7102134IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-4103129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.202103130IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5104128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033173200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-6173200IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577173201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-8175201IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-10260295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-15261294IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7264291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507264292IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-11265291IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDSSYSDSNP LFAQSPYGNW SQNQIIDPMS NSMNNEQGDT HSLSELQSNS MPHHQLQPPL  60
KRPRHIDETM FNPVSSFTPT SNNPWMTPSL NPPPVNKGTA NIFYKTRMCA KFRAGACRNG  120
ELCNFAHGVE DLRQPPSNWQ EIVGPPVPER EREREQRPAL STGNNWEEDQ KIILRMKLCR  180
KFCFGEECPY GDRCNFIHEE LSKFREDTGK QRESLAISVG TTPVDSPLEN GIASNQIEVN  240
RQGAMNTPIS VSTPINNGVV KTVYWKTRLC MKFEITGQCP FGDKCHFAHG QAELHNSVGR  300
VEGEAINTTP SASKQQMPPL NEAFAMKPAT QVTQDSSVLN EEGRRKKCLL KWSDSKKINR  360
IYGDWIDDLP VGQPPSKPLE S
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00605
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0256245e-36AB025624.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLD14.
GenBankAY0372265e-36AY037226.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
GenBankAY0817455e-36AY081745.1 Arabidopsis thaliana AT3g19360/MLD14_8 mRNA, complete cds.
GenBankCP0026865e-36CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001327691.10.0Zinc finger (CCCH-type) family protein
RefseqNP_566631.10.0Zinc finger (CCCH-type) family protein
SwissprotQ9LT810.0C3H39_ARATH; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A178VLX60.0A0A178VLX6_ARATH; Uncharacterized protein
STRINGAT3G19360.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM100662536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.10.0C3H family protein