 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | AA26G00379 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
|
||||||||
| Family | ARR-B | ||||||||
| Protein Properties | Length: 722aa MW: 79596.6 Da PI: 6.6751 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 90.3 | 1.7e-28 | 226 | 279 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G ekA+Pk+ilelm+v+gLt+e+v+SHLQkYR+
AA26G00379 226 KPRVVWSVELHQQFVAAVNQL-GVEKAVPKKILELMNVPGLTRENVASHLQKYRI 279
79*******************.********************************7 PP
| |||||||
| 2 | Response_reg | 77.9 | 3.6e-26 | 32 | 140 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95
vl+vdD+p+ +++l+++l++ y ev+ + +e al ll++++ +D+++ D+ mp+mdG++ll++i e +lp+i+++a ++++ + + + Ga
AA26G00379 32 VLVVDDDPTCLMILERMLRSCLY-EVTKCNRAEMALSLLRKNKngFDIVISDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDSKSVVFKGVTHGAV 126
89*********************.***************999999**********************6654.8************************ PP
EEEESS--HHHHHH CS
Response_reg 96 dflsKpfdpeelvk 109
d+l Kp+ +e+l +
AA26G00379 127 DYLIKPVRMEALKN 140
*********99986 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 5.1E-188 | 6 | 674 | IPR017053 | Response regulator B-type, plant |
| Gene3D | G3DSA:3.40.50.2300 | 4.3E-41 | 29 | 164 | No hit | No description |
| SuperFamily | SSF52172 | 5.12E-36 | 29 | 166 | IPR011006 | CheY-like superfamily |
| SMART | SM00448 | 2.9E-31 | 30 | 142 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 43.09 | 31 | 146 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 1.9E-23 | 32 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 1.25E-28 | 33 | 145 | No hit | No description |
| PROSITE profile | PS51294 | 11.54 | 223 | 282 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 1.77E-19 | 224 | 283 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 9.8E-30 | 225 | 284 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 3.6E-24 | 226 | 279 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 4.8E-8 | 228 | 278 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 722 aa Download sequence Send to blast |
MMNPSHGNGL SGSRVGEIAA VVVDKFPAGL RVLVVDDDPT CLMILERMLR SCLYEVTKCN 60 RAEMALSLLR KNKNGFDIVI SDVHMPDMDG FKLLEHIGLE MDLPVIMMSA DDSKSVVFKG 120 VTHGAVDYLI KPVRMEALKN IWQHVVRKMR SEWSAPEQSG SIEESGERPQ QQRGGSAAVS 180 VGDEADDNSS SVNEGNWRSS NGSRKRKDEE SDEQGDDKED SSNLKKPRVV WSVELHQQFV 240 AAVNQLGVEK AVPKKILELM NVPGLTRENV ASHLQKYRIY LRRLGGVSQH QGNLSNSFMT 300 GQDASFTHLS SLNGFDLQTL AVTGQLPAQS LAQLQGLSRP VVSKPGIQVS PIVDERSIFS 360 FDNPKMRFGD GHRQPPLPQM NLLHGIPTSM EPKHLIPGLQ QQQQQQSNRM SIQQQIAAVR 420 AGQSVQNTGL MMPLPSQQPR GSQMINSQSG LRQQQMVPNR IPERNCYSGT VTGRINIPES 480 SRVLPTSYSV ATTSAFNNNL PCEIPVNRFP IASTPGLSSA PIPRPPVSYQ EEVNSSDTGF 540 ATSSYNMFTN PQQRNNDWDL RSIGLVFDAQ PDAESAAFSA SEAYSSSSLP RNRSDANTVT 600 VPSHSRNQQP PQVPLQHHMN QTYDNGSSRV KPERSACPPS TMFQEQFNNN NQEDLMSALL 660 KQVCNFKTPF FSVCVSKANV ISVCVSKANV ISFCVYYVQE GIGGPVDTEF DFDAYSIDNI 720 SV |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 7e-23 | 225 | 284 | 4 | 63 | ARR10-B |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Regulates SHY2 by binding to its promoter (PubMed:19039136). Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). {ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:11691951, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:19039136}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | AA26G00379 |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: Down-regulated by gibberellin. {ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006297106.1 | 0.0 | two-component response regulator ARR1 | ||||
| Swissprot | Q940D0 | 0.0 | ARR1_ARATH; Two-component response regulator ARR1 | ||||
| TrEMBL | R0HK04 | 0.0 | R0HK04_9BRAS; Two-component response regulator | ||||
| STRING | XP_006297106.1 | 0.0 | (Capsella rubella) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM2403 | 27 | 73 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G16857.2 | 0.0 | response regulator 1 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|