PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA26G00262
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family NAC
Protein Properties Length: 646aa    MW: 72769 Da    PI: 8.2529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA26G00262genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.51.6e-50141391128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrF Ptdeel+veyL++k++g++++l + i+e+d+yk++Pw Lp+k+  +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk + + +g+ 
  AA26G00262  14 LPPGFRFYPTDEELMVEYLCRKAAGHDFSL-HLIAEIDLYKLDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVIST-EGRR 110
                 79**************************99.88***************7777799**********************************99999.9999 PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kk Lvfy g+apkg+kt+W+mheyrl
  AA26G00262 111 VGIKKALVFYIGKAPKGTKTNWIMHEYRL 139
                 ***************************98 PP
2NAM171.72.2e-533374641128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 
                 lppGfrFhPtdeelvv+yLk+k+++ +l++ ++i+evd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+vl++ +++
  AA26G00262 337 LPPGFRFHPTDEELVVHYLKRKASSAPLPV-SIIAEVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLASnGNQ 434
                 79****************************.89***************999999***************************************986778 PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                 +vg+kk Lvfy+g+ pkg+k+dW+mheyrl
  AA26G00262 435 KVGVKKALVFYSGKPPKGVKSDWIMHEYRL 464
                 8***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-659162IPR003441NAC domain
PROSITE profilePS5100559.60314162IPR003441NAC domain
PfamPF023654.7E-2515139IPR003441NAC domain
SuperFamilySSF1019412.62E-64333499IPR003441NAC domain
PROSITE profilePS5100562.213337499IPR003441NAC domain
PfamPF023652.0E-27338464IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MGLQEPDPLA QLSLPPGFRF YPTDEELMVE YLCRKAAGHD FSLHLIAEID LYKLDPWVLP  60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVISTEGRR VGIKKALVFY  120
IGKAPKGTKT NWIMHEYRLI EPSRRNGSSK LDDWVLCRIY KKQTSAQKQV YNNLMAGEYS  180
NNGSETTSSS SHHHYDDVLH EVDNRSLSYG SGSNISMQHR PVLTDQKTGL IQNNNFISRE  240
SNFDWTHNNN LGPSGHNSVG ELGLSHNVPS LGYNDNGYGV KADDVEAENS HRRQQESDRF  300
TRFNNNYGVL TQGFGVDPVI GFGYPDSSGG PPPQPNLPPG FRFHPTDEEL VVHYLKRKAS  360
SAPLPVSIIA EVDLYKFDPW ELPAKASFGE QEWYFFSPRD RKYPNGARPN RAATSGYWKA  420
TGTDKPVLAS NGNQKVGVKK ALVFYSGKPP KGVKSDWIMH EYRLVDNKPS NNRPPGYDFT  480
NKKNSLRLDD WVLCRIYKKN NGTNRHVDNN TEKDHEMIDY IFRKIPPMAV SNGFNYNNVS  540
RMNNLYPGVF SNGSGGDHQL GLYEGGMMNN NGDDDVTGLM SNFKRSLPVP YWPAVTEEEE  600
INDVSVSSSK RFHGDCSNVM TETTPQQQGG VIGDGIYRTA SYQWGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-11215057174NAC domain-containing protein 19
3swm_B1e-11215057174NAC domain-containing protein 19
3swm_C1e-11215057174NAC domain-containing protein 19
3swm_D1e-11215057174NAC domain-containing protein 19
3swp_A1e-11215057174NAC domain-containing protein 19
3swp_B1e-11215057174NAC domain-containing protein 19
3swp_C1e-11215057174NAC domain-containing protein 19
3swp_D1e-11215057174NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00360DAPTransfer from AT3G15500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA26G00262
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by high salinity. Slightly up-regulated by drought, abscisic acid (ABA) and jasmonic acid. Not induced by cold treatment. {ECO:0000269|PubMed:15319476}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_188169.11e-154NAC domain containing protein 3
SwissprotQ9LDY81e-155NAC55_ARATH; NAC domain-containing protein 55
TrEMBLA0A087H9U01e-157A0A087H9U0_ARAAL; Uncharacterized protein
STRINGA0A087H9U01e-158(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14352795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.11e-155NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Zheng XY, et al.
    Coronatine promotes Pseudomonas syringae virulence in plants by activating a signaling cascade that inhibits salicylic acid accumulation.
    Cell Host Microbe, 2012. 11(6): p. 587-96
    [PMID:22704619]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhu X, et al.
    Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes.
    Plant J., 2015. 84(3): p. 597-610
    [PMID:26407000]
  5. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  6. Gimenez-Ibanez S, et al.
    JAZ2 controls stomata dynamics during bacterial invasion.
    New Phytol., 2017. 213(3): p. 1378-1392
    [PMID:28005270]
  7. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]
  8. Fu Y,Ma H,Chen S,Gu T,Gong J
    Control of proline accumulation under drought via a novel pathway comprising the histone methylase CAU1 and the transcription factor ANAC055.
    J. Exp. Bot., 2018. 69(3): p. 579-588
    [PMID:29253181]