PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA26G00019 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | NAC | ||||||||
Protein Properties | Length: 227aa MW: 25917.2 Da PI: 9.8447 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.2 | 4.1e-33 | 12 | 87 | 52 | 128 |
NAM 52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + kewyf+s++d+kyatg+r+nrat sgyWkatgkd+ +++ kg++vg++ktLvfy+grapkg+ktdWvmhe+rl AA26G00019 12 EVGGKEWYFYSQKDRKYATGQRTNRATGSGYWKATGKDRGIYR-KGRVVGMRKTLVFYQGRAPKGRKTDWVMHEFRL 87 44779**************************************.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 40.446 | 1 | 104 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.8E-15 | 7 | 87 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.96E-38 | 13 | 104 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MNGKKNKVMD AEVGGKEWYF YSQKDRKYAT GQRTNRATGS GYWKATGKDR GIYRKGRVVG 60 MRKTLVFYQG RAPKGRKTDW VMHEFRLQHS PLKEEWVLCR VFHKKSDREN MIRSCSDETQ 120 SATLTPFIKF DQQLASNFPS DDHGDMMRNQ QVQVQVQVPC FSFLPQNQTN LSAPLFTGTA 180 SSDQMVLRAL LSQLTNSAKE SESCGEGSSE THLTDNNIAI PPTLWNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-33 | 11 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swm_B | 5e-33 | 11 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swm_C | 5e-33 | 11 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swm_D | 5e-33 | 11 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_A | 5e-33 | 11 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_B | 5e-33 | 11 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_C | 5e-33 | 11 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3swp_D | 5e-33 | 11 | 106 | 69 | 170 | NAC domain-containing protein 19 |
3ulx_A | 4e-33 | 11 | 109 | 64 | 173 | Stress-induced transcription factor NAC1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA26G00019 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006407275.1 | 1e-85 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 3e-82 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1J3DZ54 | 2e-91 | A0A1J3DZ54_NOCCA; NAC domain-containing protein 21/22 | ||||
STRING | XP_006407275.1 | 5e-85 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3619 | 28 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12977.1 | 2e-76 | NAC family protein |