PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA25G00159
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 706aa    MW: 76616.8 Da    PI: 6.478
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA25G00159genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.69.6e-32269326260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 +DgynWrKYGqK vkgse+prsYY+Ct+ +C vkkkvers+ +++++ei+Y+g Hnh+k
  AA25G00159 269 EDGYNWRKYGQKLVKGSEYPRSYYKCTQLNCLVKKKVERSR-EGHITEIIYKGAHNHSK 326
                 8****************************************.***************85 PP
2WRKY103.41.3e-32490547259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+
  AA25G00159 490 EDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCTVRKHVERASHDLKSVITTYEGKHNHD 547
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.376263327IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-27266327IPR003657WRKY domain
SuperFamilySSF1182906.54E-25267327IPR003657WRKY domain
SMARTSM007742.2E-34268326IPR003657WRKY domain
PfamPF031061.5E-23269324IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-36474549IPR003657WRKY domain
SuperFamilySSF1182903.01E-28481549IPR003657WRKY domain
PROSITE profilePS5081137.792484549IPR003657WRKY domain
SMARTSM007743.2E-37489548IPR003657WRKY domain
PfamPF031061.3E-24490547IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MSNFDDNVDL MGEWVPRSPR NNITSSIRED KNSNSNSNRV LERELSLNHG QVISLQDIRN  60
KEKQSNTRGG LSERRAGFNA PRLNTENIRS TDFSIDSTVR SPCLTISSPG LSPATLLESP  120
VFLSNPLAQP SPTTGKFQLL PGVNNNNGMG ASVLEKPKDE FFDDIGLSSF SFHPISRPSS  180
SFFQEVVSLD YGNYNRSPHS MEDVKPGSQN LENQSHHTNF HETEGDLSGQ RVSDATNISL  240
EPVEPQEEEQ RRGGGGCAAD LLAGGAPAED GYNWRKYGQK LVKGSEYPRS YYKCTQLNCL  300
VKKKVERSRE GHITEIIYKG AHNHSKPPPN RRSGIGSSGA CLDTQVDGSE QSEQQGWNNG  360
NQQAGSNENV EGASPVSTGF EYGNQSGSIQ GQIGGQFEPG DAAFGSVSGV AGTVGGAGVV  420
EESPTFSNDE DEDDRGTHGS VSLGYDGEVD ESESKRRKLE AYASEMSGAT RAIREPRVVV  480
QTTSDVDILE DGYRWRKYGQ KVVKGNPNPR SYYKCTAPGC TVRKHVERAS HDLKSVITTY  540
EGKHNHDVPA ARNSGSAAGG NNNNGGGSVN QSHYNHHHSE PQRSRFERGV TATNHHSSSP  600
YGPFSFQPHL GAPNFSFGLG QTGLGNLSMP GLGFGQGKLP VMPVHPYLTQ QQQNQQQTQQ  660
GGIGENQGMM MQRGMEPKVE PVSETGIGLS SSSSIYKQLM SRLPHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36259550878Probable WRKY transcription factor 4
2lex_A2e-36259550878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA25G00159
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0121665e-59FJ012166.1 Brassica napus WRKY2 transcription factor (WRKY2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401355.10.0probable WRKY transcription factor 2
SwissprotQ9FG770.0WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLV4LSF00.0V4LSF0_EUTSA; Uncharacterized protein
STRINGBostr.26833s0636.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79542740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.10.0WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]