PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA25G00099
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 568aa    MW: 62929.9 Da    PI: 6.7058
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA25G00099genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.54.8e-32212269260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  AA25G00099 212 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 269
                 8****************************************.***************85 PP
2WRKY106.81.1e-33383441159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  AA25G00099 383 LDDGYRWRKYGQKVVRGNPNPRSYYKCTAAGCPVRKHVERASHDPKAVITTYEGKHNHD 441
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.629206270IPR003657WRKY domain
SuperFamilySSF1182905.62E-25209270IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-27210270IPR003657WRKY domain
SMARTSM007743.5E-34211269IPR003657WRKY domain
PfamPF031061.7E-24212268IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37368443IPR003657WRKY domain
SuperFamilySSF1182902.48E-29375443IPR003657WRKY domain
PROSITE profilePS5081138.825378443IPR003657WRKY domain
SMARTSM007747.7E-39383442IPR003657WRKY domain
PfamPF031064.2E-26384441IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MDPADVSDLP EFRVASEDPE ARRDSADCSG GGGGNGGGAR YKLMSPAKLP ISRSTCMTIP  60
PGLSPTSFLE SPVLLSNIKA EPSPTTGSLF KPQAVHANSS SYTGRTVPQN IFDDQKSSEF  120
EFRPHQPSNM FYAELDKHRG ETPLQFQSQL QNFKHPQSSV TEAVASSTEI SRPTPHQTTQ  180
SVSDTPDRSD QEESIQTSQN DSKGNAPSIL ADDGYNWRKY GQKHVKGSEF PRSYYKCTHP  240
NCEVKKLFER SHDGQITEII YKGTHDHPKP QPSRRNSGGL VMPAQEERLD KYSPLNGRDE  300
KGSSIYNLSP PIEQNGNPEV SPVSTNDDGG EVAMPNRNND DVDENDPFSK RRRLDGTMEI  360
TPLVKPIREP RVVVQTLSEV DILDDGYRWR KYGQKVVRGN PNPRSYYKCT AAGCPVRKHV  420
ERASHDPKAV ITTYEGKHNH DVPTARSNNH DLSSAGMSHN RFRPEETDTI SLDLGVGLAS  480
GGPDHTSNEH QHQQQQQHMH PELSHQTHNN GGGFRFVHGA PMASYYANLN NGMNHQYSSR  540
ETPNEAQASD ISSSYPYPHN IGRIQSGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36210443877Probable WRKY transcription factor 4
2lex_A1e-36210443877Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349353KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA25G00099
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006401438.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLV4NAL90.0V4NAL9_EUTSA; Uncharacterized protein
STRINGBostr.26833s0701.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein