PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA25G00054 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | Nin-like | ||||||||
Protein Properties | Length: 257aa MW: 30501.9 Da PI: 4.7423 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 83.2 | 2.6e-26 | 134 | 184 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + ++s e++s+yF++pi+ AAkeL+++lT+LK++CR++GI+RWPhRk+ sl AA25G00054 134 KTNLSKETISNYFYMPITRAAKELNIGLTLLKKRCRELGIQRWPHRKLMSL 184 679*********************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.654 | 109 | 205 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 9.6E-22 | 136 | 184 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MNPYKEWQDW FSSEENFGFD FNFNFDTIKP LSSSFFTDYL SFPDLESISS FSQDVLSGSQ 60 GSESWIETID QNNKNETYNI GDSSNPEKTK KRRSHHQESE EQDQEQEQEQ EQYQQEQESE 120 IDENHEMINW GSTKTNLSKE TISNYFYMPI TRAAKELNIG LTLLKKRCRE LGIQRWPHRK 180 LMSLQTLIKN VKELEMAEGE EVNGRNLRSA LEILEMEKKM IEELPDLEFE DKTKRLRQAC 240 FKANYKRRRL MIISSKT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 94 | KRRSH |
2 | 245 | 249 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA25G00054 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010480535.1 | 3e-62 | PREDICTED: protein RKD1 | ||||
Swissprot | Q9CA66 | 5e-58 | RKD2_ARATH; Protein RKD2 | ||||
STRING | XP_010480535.1 | 1e-61 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12180 | 19 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18790.1 | 6e-52 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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