PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA24G00041 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 129aa MW: 14371.4 Da PI: 10.1618 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 40.7 | 2.9e-13 | 18 | 66 | 5 | 50 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT...SEEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsst...gklyeys 50 k +r+v fskRr g++KK ELS L + +vav s++ + +++y+ AA24G00041 18 TKEQRSVAFSKRRVGVFKKSAELSLLSGCRVAVFANSPSansDSIHTYA 66 5789*****************************9988751115566665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.8E-12 | 6 | 68 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.395 | 6 | 56 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.19E-16 | 7 | 80 | No hit | No description |
PRINTS | PR00404 | 1.0E-6 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.42E-15 | 8 | 85 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.6E-12 | 19 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-6 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MSKSTKTKTK IPIQKRDTKE QRSVAFSKRR VGVFKKSAEL SLLSGCRVAV FANSPSANSD 60 SIHTYASNST ALEIAQCYLN GTVPPKLGFW WEDSKLDHCE DPATLQSMID RLEKNKKDAL 120 AAFENKKGF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA24G00041 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010487931.2 | 3e-33 | PREDICTED: uncharacterized protein LOC104765850 isoform X1 | ||||
Refseq | XP_019084259.1 | 9e-34 | PREDICTED: agamous-like MADS-box protein AGL97 | ||||
Refseq | XP_019096884.1 | 3e-33 | PREDICTED: uncharacterized protein LOC104765850 isoform X1 | ||||
Refseq | XP_019096885.1 | 3e-33 | PREDICTED: uncharacterized protein LOC104765850 isoform X1 | ||||
Refseq | XP_019096886.1 | 3e-33 | PREDICTED: uncharacterized protein LOC104765850 isoform X1 | ||||
TrEMBL | C0SVQ9 | 1e-31 | C0SVQ9_ARATH; Uncharacterized protein At5g27130 (Fragment) | ||||
TrEMBL | F4K2U3 | 1e-31 | F4K2U3_ARATH; AGAMOUS-like 39 | ||||
TrEMBL | O04657 | 1e-31 | O04657_ARATH; A_TM021B04.16 protein | ||||
STRING | XP_010487927.1 | 1e-32 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6395 | 14 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G27130.1 | 2e-34 | AGAMOUS-like 39 |