PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AA23G00026 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 20867.3 Da PI: 9.6239 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 105.7 | 3.9e-33 | 27 | 118 | 1 | 92 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++r+kC+kdC+l+ yfp +++k+f++vhk+FG+sn++k++++++ee+r+++ +sl++eA +r++dP+ G++g ++++ ++l+ k+ AA23G00026 27 ACASCKHQRKKCNKDCILSLYFPVRKTKEFQAVHKVFGVSNIQKMVRSVREEDRTKLSDSLTWEALWRQKDPILGSYGEYRRICEELKLYKS 118 7************************************************************************************9998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.206 | 26 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-30 | 27 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MQRNPNNNNN NNNNNNNISS NSSSHQACAS CKHQRKKCNK DCILSLYFPV RKTKEFQAVH 60 KVFGVSNIQK MVRSVREEDR TKLSDSLTWE ALWRQKDPIL GSYGEYRRIC EELKLYKSLV 120 HHQPRVIGWE NHHQQSCGLG GFSVNNDGEI NGGYTSRNIQ DQRQQCYAVI NGFKQHYLPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-16 | 19 | 104 | 3 | 88 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-16 | 19 | 104 | 3 | 88 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00128 | DAP | Transfer from AT1G06280 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AA23G00026 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006417938.1 | 2e-89 | LOB domain-containing protein 2 | ||||
Swissprot | Q9LNB9 | 8e-88 | LBD2_ARATH; LOB domain-containing protein 2 | ||||
TrEMBL | V4MVQ1 | 4e-88 | V4MVQ1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006417938.1 | 7e-89 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10539 | 26 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 2e-90 | LOB domain-containing protein 2 |