PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00481
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ERF
Protein Properties Length: 274aa    MW: 31074 Da    PI: 8.0933
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00481genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1865113355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 y+G+r ++ +g+W+AeIrdp++     r +lg+f taeeAa+a+++a+ k++g
  AA21G00481  65 YRGIRKRS-WGKWAAEIRDPRK---GVRLWLGTFKTAEEAARAYDNAAIKIRG 113
                 9****888.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.26364121IPR001471AP2/ERF domain
SMARTSM003804.5E-3864127IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-2264122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.8E-3264122IPR001471AP2/ERF domain
CDDcd000182.95E-3465122No hitNo description
PRINTSPR003676.7E-116576IPR001471AP2/ERF domain
PfamPF008472.3E-1165113IPR001471AP2/ERF domain
PRINTSPR003676.7E-1187103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MCGGAIISDF FTGDRRRSVS TADLCLKFES GPSQLGSLSL KKRRPFSVGG QEEKEKPKRQ  60
RKNLYRGIRK RSWGKWAAEI RDPRKGVRLW LGTFKTAEEA ARAYDNAAIK IRGKKAKVNF  120
PNEFTNFTYP TRKTHSNYTP NLVSQSTKNC FNTQIPDSKI TNLGLENDLS NLMKPEPDGC  180
SVKQNLNLTN CCSMLDEISE LSSVNEPPIS LDSNDEKLFK EEKNEVQKLS EELMAYEDYM  240
EFYQIPYIDG ESATDAAHQV SDLGNLWSFQ DVVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-22651241575Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15560KPKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00481
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010527368.13e-92PREDICTED: ethylene-responsive transcription factor ERF071-like
RefseqXP_010541232.13e-92PREDICTED: ethylene-responsive transcription factor ERF071-like
RefseqXP_010559200.13e-92PREDICTED: ethylene-responsive transcription factor ERF071-like
TrEMBLA0A067K8U51e-65A0A067K8U5_JATCU; Uncharacterized protein
STRINGXP_010527368.11e-91(Tarenaya hassleriana)
STRINGXP_010541232.11e-91(Tarenaya hassleriana)
STRINGXP_010559200.11e-91(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.17e-36ERF family protein