PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00452
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family WRKY
Protein Properties Length: 343aa    MW: 39108.4 Da    PI: 7.0562
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00452genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.2e-33181238259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s+fprsYYrCt+++C+vkk+vers +dp++v++tYeg+H+h 
  AA21G00452 181 EDGYRWRKYGQKAVKNSPFPRSYYRCTTSSCNVKKRVERSFKDPTTVVTTYEGQHTHM 238
                 8********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381307.9E-1091343IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.804.2E-34165240IPR003657WRKY domain
SuperFamilySSF1182901.96E-28172239IPR003657WRKY domain
PROSITE profilePS5081130.905175240IPR003657WRKY domain
SMARTSM007741.4E-37180239IPR003657WRKY domain
PfamPF031061.1E-25181237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MENNGVGMSS SISDFAKASF LDPSWDFGDL VSTERNSLGF MELLGVQYQD FMTPNSHSLL  60
FETTQPQQTQ TQQLQPQFSV KTSFSTIPNA VESSKVESSC SDHLLINPPA TPNSSSISSA  120
SSEALNEEQA KRVNKHEEEG EQEKKNLTTK KQLNPKKTNE KKRQREPRVA FMTKSEVDHL  180
EDGYRWRKYG QKAVKNSPFP RSYYRCTTSS CNVKKRVERS FKDPTTVVTT YEGQHTHMSP  240
LMSRPIFNNG VVASNLSGLN GCFGLPMESF TRTPQFHQLL YYQQRQDQQQ QQQKDLSSFE  300
YLNSHVNGYC KEDDDKVKKS RGEDLKDHGL LQDVVPSHMF NEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-28170240777Probable WRKY transcription factor 4
2lex_A7e-28170240777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00452
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020885622.11e-124probable WRKY transcription factor 23
SwissprotO229001e-112WRK23_ARATH; WRKY transcription factor 23
TrEMBLD7LGL41e-123D7LGL4_ARALL; Predicted protein
STRINGAl_scaffold_0004_34321e-124(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61522647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.12e-99WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]