PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00409
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 324aa    MW: 36981.6 Da    PI: 6.5165
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00409genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13134184154
                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 +r++h ++Er+RR+++N+ ++ Lr+l+P++   +  + + a+i+  A++++k L
  AA21G00409 134 QRMTHIAVERNRRRQMNDHLNSLRTLIPPS---YIHRGDQASIVGGAIDFVKVL 184
                 79****************************...9****************9977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.02E-11132189No hitNo description
SuperFamilySSF474596.15E-16132196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.097133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-11134184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-13134195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MLQQTGDTSL SCKEPNFLAL LSLQKPWELE SYLSHEVPDF HSPIQSQTNQ IYQNQASTTS  60
MEQVNEAISS QELLLNPLDD ILNQTNLIPV STSPSTANSR RKRKMNHLKP EMGREKRKRK  120
RTKPTKNIEE IENQRMTHIA VERNRRRQMN DHLNSLRTLI PPSYIHRGDQ ASIVGGAIDF  180
VKVLEQLLQS LEAQKITQQN GGNEDEQEEE NKDENPENKS LRDISSNDLR TIKEEQTCNP  240
KIDATVVQNH VNLTIQCHRK QGQLLKAIIL LDELRLTVLH LNITSPSHTT ISYSFNLKIE  300
EDCKLGSGDE IAAAMSQMFS NRID
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101120KRKMNHLKPEMGREKRKRKR
2116123RKRKRTKP
3134145RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00409
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010544881.11e-131PREDICTED: transcription factor bHLH67-like isoform X1
SwissprotO810371e-125BH070_ARATH; Transcription factor bHLH70
TrEMBLR0FU141e-125R0FU14_9BRAS; Uncharacterized protein
TrEMBLR0HQY41e-124R0HQY4_9BRAS; Uncharacterized protein
STRINGBostr.25993s0085.1.p1e-136(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.11e-120bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]