PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA21G00382
Organism
Aethionema arabicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family bHLH
Protein Properties Length: 551aa    MW: 62117.6 Da    PI: 5.0804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA21G00382genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.18.8e-15389435455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ Le A+ YIk+Lq
  AA21G00382 389 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLEDAIAYIKELQ 435
                 799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.3E-5249237IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.76E-19384445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.019385434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-16388439No hitNo description
PfamPF000104.0E-12389435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-18389445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-18391440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MNNISDVGWD DEDKSLVTTV LGHLAYDFLR ANSGSNQNLF LVMGTDDSLH TKLSSLVDWP  60
NSENFSWNYA IFWQQTMSRS GQQVLGWGDG CCREPNEEED SKVIRVYNLG LDVETWEGMR  120
KRVLQKLHRL FGGSDEDNYA KSLEKVTATE MFFLSSMYFF FPHGEGGPGR CYASGKHIWI  180
SDAMTSDSDY CFRSFMAKSA GIRTIVLVPT DAGVLELGSV WSLPENFELV KSVQTLFMRR  240
PRHMNDTVIN GSKTDGIHKL FGQELNNNSE QVVNNGYPKK LNVSQAWEGF QGDSRNGFRG  300
FTCQEMDGKV QELVNGVLDE TRTSSYQSLR LSNQTQIEFT CSVAGSTNTQ LEKSDSCTEK  360
KAIIECNLDE KRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRS VVPNISKMDK  420
ASLLEDAIAY IKELQEKVKI LESESLSESN QTRTVESPEI DIQAMNDEVV VRVISPLETH  480
PASRVIQAMR NSEVDLMESK LSLAEDTMFH TFVIKNGGDP LTKEKLFAAV YPETSSVQPL  540
PSSSSQVSGD F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-29383455274Transcription factor MYC2
5gnj_B6e-29383455274Transcription factor MYC2
5gnj_E6e-29383455274Transcription factor MYC2
5gnj_F6e-29383455274Transcription factor MYC2
5gnj_G6e-29383455274Transcription factor MYC2
5gnj_I6e-29383455274Transcription factor MYC2
5gnj_M6e-29383455274Transcription factor MYC2
5gnj_N6e-29383455274Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370378KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAA21G00382
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020884075.10.0transcription factor ABA-INDUCIBLE bHLH-TYPE
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLD7LEK30.0D7LEK3_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.4__2868__AT2G46510.10.0(Arabidopsis lyrata)
STRINGBostr.25993s0115.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.10.0ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]